Wall clock time and date at job start Mon Mar 30 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00167 * 2 1 4 4 H 1.48502 * 109.47078 * 270.00138 * 3 2 1 5 5 H 1.48498 * 109.47303 * 29.99968 * 3 2 1 6 6 H 1.48500 * 109.47266 * 150.00482 * 3 2 1 7 7 C 1.37880 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99905 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47392 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.34202 * 307.11939 * 10 9 7 12 12 C 1.53731 * 110.30283 * 185.00029 * 10 9 7 13 13 C 1.51226 * 104.58798 * 241.07172 * 12 10 9 14 14 C 1.38187 * 130.91763 * 179.97438 * 13 12 10 15 15 C 1.38638 * 120.10946 * 180.02562 * 14 13 12 16 16 O 1.36001 * 120.14005 * 180.02562 * 15 14 13 17 17 C 1.38717 * 119.72025 * 359.97438 * 15 14 13 18 18 C 1.37818 * 120.16736 * 0.02562 * 17 15 14 19 19 C 1.38550 * 108.56516 * 359.97438 * 13 12 10 20 20 N 1.39878 * 111.60591 * 0.02562 * 19 13 12 21 21 H 0.97001 * 119.99598 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46863 * 59.99718 * 9 7 2 23 23 H 1.09003 * 109.47265 * 300.00107 * 9 7 2 24 24 H 1.09002 * 110.41300 * 122.29100 * 12 10 9 25 25 H 1.09003 * 110.40827 * 359.84978 * 12 10 9 26 26 H 1.08002 * 119.94737 * 359.97438 * 14 13 12 27 27 H 0.96703 * 114.00670 * 269.97745 * 16 15 14 28 28 H 1.08006 * 119.91075 * 180.02562 * 17 15 14 29 29 H 1.08004 * 119.82206 * 179.97438 * 18 17 15 30 30 H 0.96992 * 124.98013 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5666 -3.1992 0.8142 12 6 5.5535 -2.6607 0.1241 13 6 6.0285 -3.3373 -1.1422 14 6 7.3027 -3.6372 -1.5850 15 6 7.4839 -4.2721 -2.8040 16 8 8.7377 -4.5680 -3.2401 17 6 6.3810 -4.6053 -3.5766 18 6 5.1102 -4.3062 -3.1349 19 6 4.9218 -3.6668 -1.9080 20 7 3.7308 -3.2789 -1.2856 21 1 -0.4849 0.8401 -0.0004 22 1 3.8752 -0.6805 0.8888 23 1 3.8746 -0.6801 -0.8911 24 1 5.8545 -3.2370 0.9990 25 1 5.9461 -1.6456 0.1830 26 1 8.1588 -3.3757 -0.9808 27 1 9.1456 -3.8685 -3.7688 28 1 6.5186 -5.1004 -4.5266 29 1 4.2555 -4.5678 -3.7411 30 1 2.8425 -3.4156 -1.6505 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260987188.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:49 Heat of formation + Delta-G solvation = -18.983388 kcal Electronic energy + Delta-G solvation = -14166.777773 eV Core-core repulsion = 11733.631299 eV Total energy + Delta-G solvation = -2433.146474 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10355 -37.85778 -35.09114 -32.80064 -31.62473 -30.25192 -27.99554 -26.93343 -23.11491 -21.85436 -21.08349 -20.07384 -17.76912 -17.25095 -16.53417 -15.63581 -15.07442 -14.75023 -14.13222 -13.79316 -13.38084 -12.67014 -12.60928 -12.33228 -12.05343 -11.86194 -11.68105 -11.44388 -11.19099 -10.53358 -10.28416 -10.13374 -9.79914 -9.39054 -9.25476 -8.63890 -8.55599 -6.76150 -6.14238 -4.13349 1.63027 1.76811 3.24609 3.32584 3.34895 3.90542 4.02583 4.36844 4.50830 4.99908 5.17436 5.21290 5.33507 5.56318 5.67125 5.74479 5.80394 6.16074 6.27453 6.33435 6.44348 6.52004 6.73120 6.81167 6.86505 7.05416 7.20068 7.59324 7.69176 7.92961 8.38034 8.46225 8.87645 9.47767 10.98706 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.048700 B = 0.006703 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.806038 B = 4176.310969 C = 4334.156904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.024 4.024 10 C 0.158 3.842 11 H 0.073 0.927 12 C -0.084 4.084 13 C -0.165 4.165 14 C -0.082 4.082 15 C 0.022 3.978 16 O -0.500 6.500 17 C -0.095 4.095 18 C -0.181 4.181 19 C 0.208 3.792 20 N -0.716 5.716 21 H 0.264 0.736 22 H 0.028 0.972 23 H 0.018 0.982 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.375 0.625 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.020 -5.683 -4.341 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.062 4.062 10 C 0.053 3.947 11 H 0.091 0.909 12 C -0.121 4.121 13 C -0.170 4.170 14 C -0.102 4.102 15 C -0.024 4.024 16 O -0.308 6.308 17 C -0.114 4.114 18 C -0.205 4.205 19 C 0.100 3.900 20 N -0.344 5.344 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.037 0.963 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.138 0.862 27 H 0.229 0.771 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 12.640 -6.011 -3.860 14.520 hybrid contribution -0.024 1.373 -0.504 1.462 sum 12.616 -4.639 -4.364 14.133 Atomic orbital electron populations 1.69911 1.06297 1.27018 1.50689 1.25015 0.94721 0.99207 0.94373 0.86774 0.80337 0.83620 0.78533 1.20354 1.21324 1.18987 1.21020 0.89126 0.94437 1.51412 0.91060 1.20048 0.97752 0.91369 0.97040 1.21444 0.92260 0.95987 0.85009 0.90938 1.21222 0.95518 1.00510 0.94864 1.19840 0.92172 1.06316 0.98669 1.20482 0.95823 0.97802 0.96049 1.17904 0.83987 1.05631 0.94853 1.84894 1.27763 1.45251 1.72857 1.20893 0.91615 0.99675 0.99222 1.20157 0.97091 1.06952 0.96261 1.18591 0.87558 0.91841 0.92020 1.45175 1.05073 1.63038 1.21152 0.92643 0.95408 0.96326 0.90522 0.90034 0.86239 0.77146 0.86016 0.86314 0.74568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -14.10 9.51 -34.44 -0.33 -14.42 16 8 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 9 C -0.02 -0.54 3.52 -27.89 -0.10 -0.64 16 10 C 0.16 3.01 3.61 -67.53 -0.24 2.77 16 11 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 12 C -0.08 -1.36 6.58 -27.25 -0.18 -1.54 16 13 C -0.16 -2.72 6.23 -104.27 -0.65 -3.37 16 14 C -0.08 -1.23 9.98 -39.45 -0.39 -1.62 16 15 C 0.02 0.32 6.71 -39.26 -0.26 0.06 16 16 O -0.50 -6.28 13.51 -19.74 -0.27 -6.54 16 17 C -0.09 -1.33 9.96 -39.56 -0.39 -1.73 16 18 C -0.18 -2.76 10.07 -39.22 -0.39 -3.15 16 19 C 0.21 3.58 7.03 -83.55 -0.59 2.99 16 20 N -0.72 -13.21 6.03 -51.63 -0.31 -13.52 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 23 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.08 1.29 7.70 -51.93 -0.40 0.89 16 26 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 27 H 0.38 2.93 9.07 45.56 0.41 3.34 16 28 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.42 7.60 8.96 -40.82 -0.37 7.24 16 LS Contribution 257.64 15.07 3.88 3.88 Total: -1.00 -30.70 257.64 -7.04 -37.74 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -2.82 Total: 6.93 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -3.63 Total: -18.83 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.46 Total: -39.77 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.27 Total: -6.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.70 -7.04 -37.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987188.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.756 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds