Wall clock time and date at job start Mon Mar 30 2020 02:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.26850 * 54.30068 * 10 9 7 12 12 C 1.53739 * 110.29322 * 176.36209 * 10 9 7 13 13 C 1.51449 * 104.48057 * 118.90511 * 12 10 9 14 14 C 1.38188 * 130.89919 * 180.02562 * 13 12 10 15 15 C 1.38634 * 120.11270 * 180.02562 * 14 13 12 16 16 O 1.35997 * 120.14140 * 180.02562 * 15 14 13 17 17 C 1.38715 * 119.72014 * 0.03166 * 15 14 13 18 18 C 1.37825 * 120.17118 * 359.97132 * 17 15 14 19 19 C 1.38564 * 108.58352 * 0.07411 * 13 12 10 20 20 N 1.39863 * 111.60671 * 359.95001 * 19 13 12 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.09000 * 110.41009 * 237.70291 * 12 10 9 25 25 H 1.08991 * 110.41432 * 0.15252 * 12 10 9 26 26 H 1.07997 * 119.93995 * 0.06536 * 14 13 12 27 27 H 0.96702 * 114.00707 * 269.98758 * 16 15 14 28 28 H 1.08002 * 119.91822 * 179.97438 * 17 15 14 29 29 H 1.07995 * 119.82699 * 180.02562 * 18 17 15 30 30 H 0.96997 * 124.98193 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9443 -3.5613 0.8298 12 6 1.4981 -5.0025 0.0910 13 6 1.8707 -5.7315 -1.1832 14 6 1.5022 -6.9775 -1.6535 15 6 1.9844 -7.4319 -2.8712 16 8 1.6217 -8.6579 -3.3348 17 6 2.8385 -6.6308 -3.6148 18 6 3.2061 -5.3880 -3.1459 19 6 2.7234 -4.9253 -1.9200 20 7 2.9710 -3.7104 -1.2727 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 1.8313 -5.5647 0.9634 25 1 0.4219 -4.8357 0.1333 26 1 0.8369 -7.5981 -1.0716 27 1 2.2116 -9.3729 -3.0595 28 1 3.2164 -6.9818 -4.5638 29 1 3.8711 -4.7688 -3.7295 30 1 3.5395 -3.0033 -1.6157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260987189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:53 Heat of formation + Delta-G solvation = -22.438377 kcal Electronic energy + Delta-G solvation = -14124.571424 eV Core-core repulsion = 11691.275131 eV Total energy + Delta-G solvation = -2433.296294 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01078 -37.78076 -35.00227 -32.85125 -31.53987 -29.83376 -27.91050 -26.57482 -23.33208 -21.85073 -21.02782 -20.09358 -17.69501 -17.07048 -16.27346 -15.53978 -14.96079 -14.73711 -14.25689 -13.69263 -13.37342 -12.50032 -12.40239 -12.17389 -11.81426 -11.67609 -11.51135 -11.35592 -11.06871 -10.60712 -10.42234 -10.06866 -9.94123 -9.16636 -9.15429 -8.49243 -8.45953 -6.67825 -6.09015 -4.12698 1.69853 1.83399 3.24718 3.32864 3.35214 4.02769 4.04976 4.37661 4.56289 5.07251 5.26050 5.28081 5.42897 5.65262 5.77991 5.84714 5.86903 6.24846 6.36585 6.46483 6.52512 6.75196 6.81278 6.89705 6.97892 7.39678 7.59149 7.77587 7.88220 7.99066 8.27350 8.51619 8.92801 9.51842 11.01980 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.056900 B = 0.006215 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.969717 B = 4503.832879 C = 4714.987507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.012 3.988 10 C 0.148 3.852 11 H 0.066 0.934 12 C -0.082 4.082 13 C -0.162 4.162 14 C -0.082 4.082 15 C 0.021 3.979 16 O -0.499 6.499 17 C -0.096 4.096 18 C -0.183 4.183 19 C 0.209 3.791 20 N -0.716 5.716 21 H 0.261 0.739 22 H 0.024 0.976 23 H 0.028 0.972 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.374 0.626 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.730 -12.323 -2.852 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.026 4.026 10 C 0.043 3.957 11 H 0.084 0.916 12 C -0.120 4.120 13 C -0.168 4.168 14 C -0.102 4.102 15 C -0.025 4.025 16 O -0.307 6.307 17 C -0.115 4.115 18 C -0.207 4.207 19 C 0.101 3.899 20 N -0.344 5.344 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.138 0.862 27 H 0.227 0.773 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.083 -11.740 -2.941 13.127 hybrid contribution 0.978 1.087 -0.015 1.462 sum 6.061 -10.654 -2.955 12.608 Atomic orbital electron populations 1.69965 1.06072 1.26659 1.50356 1.25011 0.94827 0.99282 0.95168 0.86544 0.80004 0.83832 0.77650 1.19801 1.21025 1.20948 1.21150 0.92813 0.90883 1.51146 0.92750 1.19568 0.93759 0.91189 0.98036 1.21686 0.93988 0.95252 0.84727 0.91590 1.21250 1.01637 0.94692 0.94374 1.19917 1.02725 0.95287 0.98824 1.20487 0.99621 0.95256 0.94803 1.17901 1.02418 0.87591 0.94572 1.84911 1.54607 1.15326 1.75820 1.20872 0.96888 0.94330 0.99389 1.20132 1.06760 0.97662 0.96130 1.18589 0.92516 0.87013 0.91828 1.45174 1.52101 1.15339 1.21769 0.92918 0.95796 0.95373 0.90820 0.89809 0.86245 0.77323 0.86103 0.86463 0.74960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.00 8.90 -34.44 -0.31 -14.31 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.01 0.30 4.46 -27.88 -0.12 0.18 16 10 C 0.15 2.94 3.62 -67.53 -0.24 2.70 16 11 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 12 C -0.08 -1.43 6.60 -27.13 -0.18 -1.61 16 13 C -0.16 -2.82 6.23 -104.15 -0.65 -3.47 16 14 C -0.08 -1.29 9.98 -39.45 -0.39 -1.68 16 15 C 0.02 0.32 6.71 -39.26 -0.26 0.06 16 16 O -0.50 -6.52 13.51 -19.73 -0.27 -6.79 16 17 C -0.10 -1.39 9.96 -39.56 -0.39 -1.79 16 18 C -0.18 -2.88 10.07 -39.21 -0.39 -3.27 16 19 C 0.21 3.72 7.04 -83.55 -0.59 3.13 16 20 N -0.72 -13.51 6.00 -51.62 -0.31 -13.82 16 21 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 22 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.08 1.49 7.70 -51.93 -0.40 1.09 16 26 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 27 H 0.37 2.98 9.07 45.56 0.41 3.39 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.41 7.49 8.93 -40.82 -0.36 7.13 16 LS Contribution 261.17 15.07 3.94 3.94 Total: -1.00 -30.62 261.17 -7.41 -38.03 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -2.85 Total: 6.60 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.63 Total: -18.52 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.43 Total: -39.34 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.27 Total: -6.79 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.62 -7.41 -38.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.595 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds