Wall clock time and date at job start Mon Mar 30 2020 02:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.26850 * 54.30068 * 10 9 7 12 12 C 1.53739 * 110.29322 * 176.36209 * 10 9 7 13 13 C 1.51449 * 104.48057 * 118.90511 * 12 10 9 14 14 C 1.38188 * 130.89919 * 180.02562 * 13 12 10 15 15 C 1.38634 * 120.11270 * 180.02562 * 14 13 12 16 16 O 1.35997 * 120.14140 * 180.02562 * 15 14 13 17 17 C 1.38715 * 119.72014 * 0.03166 * 15 14 13 18 18 C 1.37825 * 120.17118 * 359.97132 * 17 15 14 19 19 C 1.38564 * 108.58352 * 0.07411 * 13 12 10 20 20 N 1.39863 * 111.60671 * 359.95001 * 19 13 12 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.09000 * 110.41009 * 237.70291 * 12 10 9 25 25 H 1.08991 * 110.41432 * 0.15252 * 12 10 9 26 26 H 1.07997 * 119.93995 * 0.06536 * 14 13 12 27 27 H 0.96702 * 114.00707 * 269.98758 * 16 15 14 28 28 H 1.08002 * 119.91822 * 179.97438 * 17 15 14 29 29 H 1.07995 * 119.82699 * 180.02562 * 18 17 15 30 30 H 0.96997 * 124.98193 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9443 -3.5613 0.8298 12 6 1.4981 -5.0025 0.0910 13 6 1.8707 -5.7315 -1.1832 14 6 1.5022 -6.9775 -1.6535 15 6 1.9844 -7.4319 -2.8712 16 8 1.6217 -8.6579 -3.3348 17 6 2.8385 -6.6308 -3.6148 18 6 3.2061 -5.3880 -3.1459 19 6 2.7234 -4.9253 -1.9200 20 7 2.9710 -3.7104 -1.2727 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 1.8313 -5.5647 0.9634 25 1 0.4219 -4.8357 0.1333 26 1 0.8369 -7.5981 -1.0716 27 1 2.2116 -9.3729 -3.0595 28 1 3.2164 -6.9818 -4.5638 29 1 3.8711 -4.7688 -3.7295 30 1 3.5395 -3.0033 -1.6157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260987189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:52 Heat of formation + Delta-G solvation = -43.688643 kcal Electronic energy + Delta-G solvation = -14125.492905 eV Core-core repulsion = 11691.275131 eV Total energy + Delta-G solvation = -2434.217774 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.30328 -38.98551 -36.36717 -34.80491 -32.83693 -31.52419 -29.22419 -28.21562 -25.15829 -23.15125 -22.26276 -21.71672 -18.88127 -18.61672 -18.06109 -16.86349 -16.67015 -16.07526 -15.68829 -15.07473 -14.66456 -14.30394 -13.78590 -13.61811 -13.52324 -13.17985 -12.99011 -12.86549 -12.57162 -12.38448 -12.22534 -11.78338 -11.26399 -11.07121 -10.61288 -10.60798 -9.69967 -8.22150 -8.02798 -6.32205 0.48401 0.62111 1.38603 1.39570 1.51559 2.38645 2.66001 2.83408 3.13933 3.44448 3.84650 3.92618 4.21455 4.33701 4.43050 4.55103 4.66246 4.82983 4.99310 5.11966 5.16525 5.26777 5.42065 5.54696 5.60291 5.64660 5.77447 5.86043 6.17415 6.34851 6.83326 7.05655 7.12413 7.36977 8.90497 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.056900 B = 0.006215 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.969717 B = 4503.832879 C = 4714.987507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.020 3.980 10 C 0.156 3.844 11 H 0.071 0.929 12 C -0.077 4.077 13 C -0.177 4.177 14 C -0.090 4.090 15 C 0.031 3.969 16 O -0.505 6.505 17 C -0.097 4.097 18 C -0.182 4.182 19 C 0.180 3.820 20 N -0.726 5.726 21 H 0.262 0.738 22 H -0.013 1.013 23 H 0.006 0.994 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.136 0.864 27 H 0.400 0.600 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -13.409 -3.565 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.568 4.568 8 H 0.081 0.919 9 C -0.018 4.018 10 C 0.050 3.950 11 H 0.089 0.911 12 C -0.115 4.115 13 C -0.182 4.182 14 C -0.110 4.110 15 C -0.015 4.015 16 O -0.316 6.316 17 C -0.116 4.116 18 C -0.205 4.205 19 C 0.074 3.926 20 N -0.356 5.356 21 H 0.071 0.929 22 H 0.005 0.995 23 H 0.024 0.976 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.154 0.846 27 H 0.257 0.743 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 6.513 -12.881 -3.664 14.892 hybrid contribution 0.506 1.267 0.133 1.371 sum 7.019 -11.613 -3.531 14.022 Atomic orbital electron populations 1.70106 1.07875 1.27628 1.51828 1.25945 0.95650 1.03286 0.94900 0.85418 0.79182 0.79017 0.77511 1.18360 1.20927 1.20570 1.21562 0.93402 0.91789 1.50061 0.91862 1.19424 0.94110 0.93129 0.95122 1.21405 0.93187 0.94580 0.85786 0.91061 1.21171 1.00617 0.93714 0.95977 1.20034 1.03292 0.96096 0.98801 1.20698 0.99928 0.94833 0.95491 1.18023 1.01222 0.88367 0.93887 1.84841 1.55674 1.15338 1.75759 1.21187 0.96425 0.93644 1.00300 1.20404 1.06494 0.98261 0.95356 1.18852 0.93896 0.86849 0.93022 1.45026 1.52612 1.16180 1.21740 0.92883 0.99466 0.97600 0.88203 0.90943 0.84638 0.74277 0.83360 0.84889 0.75048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.53 -28.89 8.90 25.60 0.23 -28.66 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.03 4.46 29.85 0.13 1.17 16 10 C 0.16 6.28 3.62 45.23 0.16 6.44 16 11 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 12 C -0.08 -2.68 6.60 30.34 0.20 -2.48 16 13 C -0.18 -5.99 6.23 -19.56 -0.12 -6.11 16 14 C -0.09 -2.65 9.98 22.35 0.22 -2.43 16 15 C 0.03 0.85 6.71 22.48 0.15 1.00 16 16 O -0.50 -11.41 13.51 -93.52 -1.26 -12.68 16 17 C -0.10 -2.53 9.96 22.29 0.22 -2.31 16 18 C -0.18 -5.37 10.07 22.51 0.23 -5.15 16 19 C 0.18 6.27 7.04 38.28 0.27 6.54 16 20 N -0.73 -27.46 6.00 -317.22 -1.90 -29.36 16 21 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 22 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 23 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 24 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 25 H 0.07 2.64 7.70 -2.39 -0.02 2.62 16 26 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 27 H 0.40 4.80 9.07 -74.06 -0.67 4.13 16 28 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.41 15.03 8.93 -92.71 -0.83 14.21 16 Total: -1.00 -65.88 261.17 0.96 -64.91 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.34 Total: 19.27 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 2.16 Total: -31.54 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -1.62 Total: -85.52 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -1.26 Total: -12.68 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -65.88 0.96 -64.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.225 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds