Wall clock time and date at job start Mon Mar 30 2020 02:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00169 * 2 1 4 4 H 1.48498 * 109.47042 * 274.98966 * 3 2 1 5 5 H 1.48506 * 109.46941 * 34.98736 * 3 2 1 6 6 H 1.48501 * 109.47225 * 154.98755 * 3 2 1 7 7 C 1.37880 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00100 * 189.61683 * 7 2 1 9 9 C 1.50705 * 120.00031 * 9.60998 * 7 2 1 10 10 H 1.09000 * 109.84808 * 306.40591 * 9 7 2 11 11 C 1.50785 * 109.85322 * 67.42351 * 9 7 2 12 12 O 1.33217 * 129.22823 * 286.63497 * 11 9 7 13 13 N 1.21413 * 111.23059 * 179.82069 * 12 11 9 14 14 C 1.30612 * 111.67873 * 0.31428 * 13 12 11 15 15 C 1.35330 * 124.13393 * 106.65814 * 11 9 7 16 16 C 1.50038 * 126.04248 * 0.25859 * 15 11 9 17 17 C 1.53485 * 109.03592 * 342.47186 * 16 15 11 18 18 C 1.53180 * 109.18210 * 46.05127 * 17 16 15 19 19 C 1.52699 * 117.90710 * 149.82439 * 18 17 16 20 20 C 1.52777 * 117.79458 * 80.78716 * 18 17 16 21 21 H 0.96997 * 119.99767 * 0.02562 * 1 2 3 22 22 H 1.08007 * 126.98305 * 179.80566 * 14 13 12 23 23 H 1.09003 * 109.54469 * 102.34046 * 16 15 11 24 24 H 1.09003 * 109.54474 * 222.60826 * 16 15 11 25 25 H 1.09005 * 109.51935 * 165.96437 * 17 16 15 26 26 H 1.09000 * 109.52042 * 286.08027 * 17 16 15 27 27 H 1.08990 * 117.50565 * 359.75502 * 19 18 17 28 28 H 1.09002 * 117.50350 * 144.80640 * 19 18 17 29 29 H 1.08993 * 117.50642 * 215.37318 * 20 18 17 30 30 H 1.09001 * 117.50697 * 0.44295 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1072 -1.3948 5 1 1.5033 2.6199 0.8028 6 1 3.5955 1.4120 0.5920 7 6 2.0046 -1.1941 0.0005 8 1 3.0732 -1.2006 0.1568 9 6 1.2669 -2.4902 -0.2168 10 1 0.4432 -2.5706 0.4925 11 6 0.7373 -2.5477 -1.6274 12 8 -0.2823 -1.8856 -2.1722 13 7 -0.4225 -2.1794 -3.3418 14 6 0.4597 -3.0623 -3.7267 15 6 1.2559 -3.3305 -2.6019 16 6 2.4208 -4.2651 -2.4572 17 6 3.2078 -3.8921 -1.1934 18 6 2.2280 -3.6739 -0.0363 19 6 2.7114 -3.9861 1.3781 20 6 1.7003 -4.9084 0.6928 21 1 -0.4850 0.8400 -0.0004 22 1 0.5579 -3.4965 -4.7108 23 1 2.0580 -5.2894 -2.3718 24 1 3.0688 -4.1779 -3.3293 25 1 3.8955 -4.6994 -0.9410 26 1 3.7713 -2.9764 -1.3722 27 1 3.7312 -4.3535 1.4919 28 1 2.3470 -3.3517 2.1861 29 1 0.6708 -4.8805 1.0497 30 1 2.0551 -5.8823 0.3555 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260987374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:25 Heat of formation + Delta-G solvation = 57.554342 kcal Electronic energy + Delta-G solvation = -15200.942759 eV Core-core repulsion = 12771.115209 eV Total energy + Delta-G solvation = -2429.827549 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.42639 -39.78321 -35.45348 -35.12436 -33.13070 -31.44495 -29.42476 -26.07719 -24.79594 -23.09744 -22.95787 -21.81140 -19.31499 -18.53376 -18.00705 -17.53305 -16.72792 -16.02939 -15.21108 -14.97619 -14.71481 -14.26702 -13.86175 -13.47933 -13.35702 -12.93617 -12.74199 -12.43868 -12.22730 -12.12977 -11.88142 -11.74689 -11.24143 -10.96054 -10.81409 -10.55005 -10.25647 -9.54132 -8.19607 -6.30727 0.96598 1.37839 1.40545 1.49623 1.65501 2.38456 2.60405 3.15511 3.19950 3.72170 3.96636 4.04237 4.16934 4.29308 4.34177 4.42957 4.68108 4.88729 4.91431 4.94066 5.06059 5.16438 5.17729 5.21556 5.40179 5.47081 5.52451 5.63670 5.69242 5.77859 6.15741 6.77529 7.36909 7.66333 8.86637 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.015027 C = 0.010977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.000540 B = 1862.816390 C = 2550.098783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.018 3.982 3 Si 0.948 3.052 4 H -0.287 1.287 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.521 4.521 8 H 0.069 0.931 9 C 0.147 3.853 10 H 0.018 0.982 11 C 0.026 3.974 12 O 0.074 5.926 13 N -0.439 5.439 14 C -0.003 4.003 15 C -0.259 4.259 16 C -0.023 4.023 17 C -0.073 4.073 18 C -0.119 4.119 19 C -0.156 4.156 20 C -0.172 4.172 21 H 0.263 0.737 22 H 0.218 0.782 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 -9.567 -1.996 11.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.213 1.213 5 H -0.208 1.208 6 H -0.180 1.180 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.127 3.873 10 H 0.036 0.964 11 C -0.039 4.039 12 O 0.020 5.980 13 N -0.152 5.152 14 C -0.180 4.180 15 C -0.264 4.264 16 C -0.060 4.060 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.193 4.193 20 C -0.209 4.209 21 H 0.072 0.928 22 H 0.235 0.765 23 H 0.106 0.894 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.132 0.868 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.733 -8.788 -2.553 10.799 hybrid contribution 0.287 1.052 0.123 1.097 sum 6.021 -7.736 -2.430 10.100 Atomic orbital electron populations 1.70090 1.07344 1.27710 1.48341 1.25806 0.95494 1.02666 0.94481 0.85680 0.79574 0.79751 0.77632 1.21332 1.20847 1.18001 1.21188 0.94616 0.90305 1.49718 0.91248 1.17105 0.92650 0.93854 0.83689 0.96447 1.25677 0.87186 0.90155 1.00905 1.84832 1.42841 1.52854 1.17428 1.74127 1.25909 1.19361 0.95798 1.25112 0.93607 0.97024 1.02297 1.21177 1.05482 1.07307 0.92462 1.19787 0.91483 0.96151 0.98609 1.21126 0.95937 1.01672 0.92243 1.21381 1.00433 0.95388 0.94681 1.22851 0.99680 1.02195 0.94603 1.23066 0.98515 0.95079 1.04259 0.92798 0.76513 0.89437 0.89114 0.88572 0.92772 0.86755 0.90578 0.90758 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.80 12.31 21.45 0.26 -52.54 16 2 C 0.02 0.97 5.27 84.65 0.45 1.41 16 3 Si 0.95 43.69 29.55 68.60 2.03 45.72 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.52 -27.54 8.23 25.60 0.21 -27.33 16 8 H 0.07 3.55 7.78 -2.91 -0.02 3.53 16 9 C 0.15 7.16 2.11 -12.08 -0.03 7.14 16 10 H 0.02 0.98 7.97 -2.39 -0.02 0.96 16 11 C 0.03 1.29 6.31 25.04 0.16 1.45 16 12 O 0.07 4.04 10.41 78.47 0.82 4.86 16 13 N -0.44 -21.26 12.10 -58.31 -0.71 -21.97 16 14 C 0.00 -0.12 12.17 85.40 1.04 0.92 16 15 C -0.26 -10.41 6.03 -20.22 -0.12 -10.54 16 16 C -0.02 -0.67 6.29 29.80 0.19 -0.49 16 17 C -0.07 -2.24 5.60 30.82 0.17 -2.06 16 18 C -0.12 -4.37 1.24 -52.11 -0.06 -4.43 16 19 C -0.16 -5.01 9.88 30.51 0.30 -4.70 16 20 C -0.17 -5.30 9.93 30.54 0.30 -4.99 16 21 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 22 H 0.22 6.16 8.06 -2.91 -0.02 6.13 16 23 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.10 2.22 8.11 -2.38 -0.02 2.20 16 26 H 0.05 1.87 8.04 -2.39 -0.02 1.85 16 27 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.07 2.47 8.13 -2.39 -0.02 2.45 16 30 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -64.89 255.86 6.14 -58.75 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.13 Total: 8.80 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 2.61 Total: -43.63 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -0.44 Total: -74.51 kcal Atomic # 8 Polarization: 4.04 SS G_CDS: 0.82 Total: 4.86 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -64.89 6.14 -58.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.305 kcal (2) G-P(sol) polarization free energy of solvation -64.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds