Wall clock time and date at job start Mon Mar 30 2020 02:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.64930 * 54.29161 * 10 9 7 12 12 C 1.54596 * 110.72774 * 291.12650 * 10 9 7 13 13 N 1.48402 * 102.38642 * 267.14501 * 12 10 9 14 14 C 1.40327 * 107.85573 * 332.71911 * 13 12 10 15 15 C 1.38806 * 110.95303 * 18.41652 * 14 13 12 16 16 C 1.38033 * 120.50023 * 179.24858 * 15 14 13 17 17 C 1.38283 * 120.18302 * 0.25602 * 16 15 14 18 18 C 1.38278 * 119.92206 * 0.02562 * 17 16 15 19 19 C 1.38334 * 120.19387 * 359.86932 * 18 17 16 20 20 O 1.36019 * 119.94415 * 179.97438 * 19 18 17 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 1.09002 * 110.78120 * 25.48486 * 12 10 9 25 25 H 1.09002 * 110.77641 * 148.92637 * 12 10 9 26 26 H 1.00903 * 111.00211 * 94.52164 * 13 12 10 27 27 H 1.08008 * 119.90661 * 180.23047 * 16 15 14 28 28 H 1.08005 * 120.04243 * 179.97438 * 17 16 15 29 29 H 1.08001 * 119.90301 * 179.85417 * 18 17 16 30 30 H 0.96695 * 113.99803 * 270.02399 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9477 -3.5673 0.8288 12 6 2.9971 -3.7393 -1.3482 13 7 2.1624 -4.6900 -2.1238 14 6 1.5167 -5.5389 -1.2118 15 6 1.5177 -4.9902 0.0632 16 6 0.9184 -5.6566 1.1131 17 6 0.3145 -6.8829 0.9041 18 6 0.3113 -7.4437 -0.3599 19 6 0.9082 -6.7803 -1.4169 20 8 0.9025 -7.3369 -2.6580 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 3.0261 -2.7626 -1.8312 25 1 4.0039 -4.1326 -1.2077 26 1 1.4928 -4.1989 -2.6972 27 1 0.9215 -5.2191 2.1005 28 1 -0.1534 -7.4025 1.7272 29 1 -0.1584 -8.4026 -0.5222 30 1 1.6655 -7.9027 -2.8387 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260991392.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:01 Heat of formation + Delta-G solvation = -44.911377 kcal Electronic energy + Delta-G solvation = -14436.048639 eV Core-core repulsion = 12001.777843 eV Total energy + Delta-G solvation = -2434.270796 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.71712 -38.76997 -36.87960 -35.59654 -32.74544 -30.52089 -29.72899 -27.59704 -25.15874 -23.64388 -22.60317 -21.47025 -18.92612 -18.89314 -17.93307 -16.99043 -16.45704 -16.17621 -15.65630 -15.38305 -14.96142 -14.83624 -14.07257 -13.69656 -13.36178 -13.11863 -12.99260 -12.62676 -12.46307 -12.13064 -11.97764 -11.84803 -11.53704 -10.83026 -10.67780 -10.56472 -9.60285 -8.92407 -8.71490 -6.43278 0.25146 0.28857 1.52241 1.60272 1.79177 2.53852 2.58792 2.84639 3.12998 3.29647 3.66896 3.87149 4.10660 4.14267 4.35834 4.43218 4.49879 4.73167 4.79707 4.89692 5.01131 5.13671 5.25518 5.31631 5.39247 5.54380 5.64266 5.87691 5.94510 6.13642 6.18652 6.51165 6.87002 7.39494 8.68171 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.046418 B = 0.007325 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.064429 B = 3821.401742 C = 4073.267990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.039 4.039 3 Si 1.118 2.882 4 H -0.287 1.287 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.611 4.611 8 H 0.059 0.941 9 C 0.037 3.963 10 C -0.065 4.065 11 H 0.076 0.924 12 C 0.067 3.933 13 N -0.624 5.624 14 C 0.044 3.956 15 C -0.138 4.138 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.131 4.131 19 C 0.097 3.903 20 O -0.502 6.502 21 H 0.252 0.748 22 H -0.017 1.017 23 H -0.020 1.020 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.349 0.651 27 H 0.125 0.875 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -14.028 -0.556 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.236 4.236 3 Si 0.939 3.061 4 H -0.212 1.212 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.648 4.648 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.085 4.085 11 H 0.095 0.905 12 C -0.061 4.061 13 N -0.252 5.252 14 C -0.054 4.054 15 C -0.141 4.141 16 C -0.132 4.132 17 C -0.130 4.130 18 C -0.150 4.150 19 C 0.051 3.949 20 O -0.314 6.314 21 H 0.062 0.938 22 H 0.001 0.999 23 H -0.002 1.002 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.173 0.827 27 H 0.143 0.857 28 H 0.181 0.819 29 H 0.180 0.820 30 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 4.006 -12.508 -0.885 13.163 hybrid contribution -0.272 -1.108 0.434 1.220 sum 3.734 -13.615 -0.451 14.125 Atomic orbital electron populations 1.70928 1.08157 1.29675 1.48736 1.27463 0.96498 1.06971 0.92668 0.82929 0.74100 0.70914 0.78195 1.21225 1.19103 1.19272 1.22394 0.94876 0.92577 1.54985 0.92228 1.18960 0.94005 0.93505 0.93565 1.21246 0.96917 0.90867 0.99467 0.90522 1.23048 0.96598 0.95288 0.91139 1.58768 1.24361 1.20014 1.22026 1.20242 0.97501 0.95733 0.91927 1.21326 1.01155 0.96079 0.95516 1.20750 0.98271 0.95856 0.98353 1.21273 0.99202 0.94697 0.97784 1.21462 1.00727 1.01510 0.91266 1.18095 1.00446 0.90525 0.85877 1.84762 1.50036 1.67363 1.29209 0.93839 0.99914 1.00174 0.89982 0.88818 0.82688 0.85747 0.81944 0.82028 0.73734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.73 13.65 21.45 0.29 -58.43 16 2 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 3 Si 1.12 49.71 29.90 68.60 2.05 51.76 16 4 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.61 -34.18 8.26 25.60 0.21 -33.97 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.04 1.93 3.80 29.85 0.11 2.04 16 10 C -0.07 -2.78 3.01 -10.71 -0.03 -2.81 16 11 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 12 C 0.07 2.55 7.24 86.56 0.63 3.18 16 13 N -0.62 -22.66 7.22 -331.34 -2.39 -25.05 16 14 C 0.04 1.59 6.71 38.29 0.26 1.84 16 15 C -0.14 -5.26 5.57 -19.50 -0.11 -5.37 16 16 C -0.11 -3.70 10.03 22.23 0.22 -3.48 16 17 C -0.11 -2.82 10.06 22.29 0.22 -2.60 16 18 C -0.13 -3.28 9.96 22.30 0.22 -3.06 16 19 C 0.10 2.94 6.73 22.66 0.15 3.09 16 20 O -0.50 -13.30 13.51 -93.76 -1.27 -14.56 16 21 H 0.25 16.18 7.22 -92.71 -0.67 15.51 16 22 H -0.02 -1.00 8.01 -2.39 -0.02 -1.02 16 23 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 24 H 0.08 3.34 7.29 -2.39 -0.02 3.32 16 25 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 26 H 0.35 13.07 8.86 -89.69 -0.79 12.27 16 27 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 28 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 30 H 0.40 6.82 9.06 -74.06 -0.67 6.15 16 Total: -1.00 -68.53 259.07 0.84 -67.69 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.20 Total: 21.49 kcal Atomic # 6 Polarization: -45.25 SS G_CDS: 2.35 Total: -42.90 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -2.10 Total: -83.48 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.27 Total: -14.56 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.76 kcal Total: -68.53 0.84 -67.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991392.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.780 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds