Wall clock time and date at job start Mon Mar 30 2020 02:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00203 * 2 1 4 4 H 1.48502 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47569 * 300.00492 * 3 2 1 6 6 H 1.48504 * 109.46948 * 60.00594 * 3 2 1 7 7 C 1.37880 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00128 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47107 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.46655 * 52.58011 * 10 9 7 12 12 C 1.53734 * 110.41329 * 290.16153 * 10 9 7 13 13 N 1.46536 * 105.20354 * 241.22470 * 12 10 9 14 14 C 1.39866 * 110.03911 * 0.02562 * 13 12 10 15 15 C 1.39638 * 129.26374 * 180.02562 * 14 13 12 16 16 C 1.37824 * 120.35540 * 179.97438 * 15 14 13 17 17 C 1.38717 * 120.16980 * 0.02562 * 16 15 14 18 18 O 1.36005 * 120.13889 * 180.02562 * 17 16 15 19 19 C 1.38635 * 119.71543 * 0.29427 * 17 16 15 20 20 C 1.38189 * 120.11295 * 359.42410 * 19 17 16 21 21 H 0.97002 * 119.99566 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47578 * 60.00130 * 9 7 2 23 23 H 1.09003 * 109.47354 * 300.00534 * 9 7 2 24 24 H 1.09004 * 110.29977 * 0.15636 * 12 10 9 25 25 H 1.08998 * 110.30062 * 122.29000 * 12 10 9 26 26 H 0.96996 * 124.97470 * 180.02562 * 13 12 10 27 27 H 1.08004 * 119.82514 * 359.97438 * 15 14 13 28 28 H 1.07999 * 119.91642 * 180.02562 * 16 15 14 29 29 H 0.96701 * 113.99782 * 90.00433 * 18 17 16 30 30 H 1.08001 * 119.94069 * 179.70250 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9645 -3.5486 0.8105 12 6 2.9711 -3.7470 -1.3530 13 7 2.6205 -5.0623 -1.8955 14 6 1.7770 -5.7376 -1.0074 15 6 1.2068 -7.0071 -1.1224 16 6 0.3934 -7.4984 -0.1241 17 6 0.1345 -6.7335 1.0038 18 8 -0.6679 -7.2191 1.9888 19 6 0.6925 -5.4698 1.1201 20 6 1.5128 -4.9796 0.1219 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5568 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.6224 -2.9580 -2.0195 25 1 4.0489 -3.6724 -1.2091 26 1 2.9283 -5.4132 -2.7458 27 1 1.4043 -7.6073 -1.9983 28 1 -0.0435 -8.4814 -0.2202 29 1 -0.1954 -7.7114 2.6740 30 1 0.4895 -4.8692 1.9945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995700.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:04 Heat of formation + Delta-G solvation = -20.141791 kcal Electronic energy + Delta-G solvation = -14269.110044 eV Core-core repulsion = 11835.913337 eV Total energy + Delta-G solvation = -2433.196706 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01640 -37.69132 -34.74090 -33.33924 -31.70466 -29.35492 -27.95186 -26.14752 -23.05783 -22.44321 -21.23299 -19.61728 -17.56267 -17.06840 -16.28733 -15.40894 -14.91449 -14.67217 -14.19184 -13.98098 -13.27369 -12.49233 -12.39979 -12.15807 -12.00745 -11.62823 -11.36944 -10.99906 -10.96980 -10.62457 -10.12754 -10.04063 -9.56992 -9.38601 -9.07248 -8.40046 -8.30260 -6.78420 -6.01986 -4.05864 1.80506 1.86271 3.29153 3.37104 3.40044 3.86538 4.10874 4.43220 4.64039 5.16083 5.32839 5.35972 5.54544 5.74819 5.84542 5.90574 5.93847 6.35498 6.39524 6.59838 6.66030 6.87308 6.90420 6.99295 7.08005 7.49197 7.65695 7.75720 7.96722 8.06177 8.26631 8.35987 9.00990 9.58512 11.08731 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.039300 B = 0.007411 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.291465 B = 3777.057473 C = 4285.153482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.049 4.049 11 H 0.078 0.922 12 C 0.127 3.873 13 N -0.747 5.747 14 C 0.188 3.812 15 C -0.178 4.178 16 C -0.108 4.108 17 C 0.037 3.963 18 O -0.498 6.498 19 C -0.082 4.082 20 C -0.131 4.131 21 H 0.260 0.740 22 H 0.019 0.981 23 H 0.022 0.978 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.404 0.596 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.375 0.625 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.304 -12.505 -0.602 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.068 4.068 11 H 0.097 0.903 12 C 0.003 3.997 13 N -0.379 5.379 14 C 0.084 3.916 15 C -0.201 4.201 16 C -0.127 4.127 17 C -0.009 4.009 18 O -0.306 6.306 19 C -0.101 4.101 20 C -0.136 4.136 21 H 0.070 0.930 22 H 0.037 0.963 23 H 0.040 0.960 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.241 0.759 27 H 0.132 0.868 28 H 0.139 0.861 29 H 0.229 0.771 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.797 -11.948 -0.965 12.574 hybrid contribution 0.848 0.606 -0.128 1.050 sum 4.645 -11.342 -1.094 12.305 Atomic orbital electron populations 1.69989 1.06063 1.26553 1.50429 1.25027 0.94809 0.99239 0.95270 0.86558 0.80081 0.83885 0.77605 1.19719 1.21060 1.21002 1.21263 0.93014 0.90821 1.50997 0.92458 1.19147 0.93146 0.89875 0.97852 1.20883 0.97627 0.92640 0.95620 0.90347 1.21952 0.98214 0.83710 0.95800 1.44940 1.53393 1.18037 1.21515 1.18477 0.90789 0.91951 0.90367 1.20059 1.03917 0.95086 1.01036 1.20834 0.98197 0.99495 0.94153 1.17996 0.98504 0.93513 0.90894 1.84909 1.35114 1.74050 1.36533 1.20611 0.95265 0.95032 0.99177 1.20159 1.01407 0.97362 0.94646 0.92983 0.96258 0.96010 0.90312 0.92724 0.75943 0.86760 0.86116 0.77127 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.25 8.59 -34.44 -0.30 -14.55 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.95 4.27 -27.89 -0.12 0.83 16 10 C -0.05 -1.02 2.98 -91.13 -0.27 -1.29 16 11 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 12 C 0.13 2.31 7.31 -3.64 -0.03 2.28 16 13 N -0.75 -12.01 6.54 -58.07 -0.38 -12.39 16 14 C 0.19 3.30 7.03 -83.55 -0.59 2.71 16 15 C -0.18 -2.72 10.07 -39.21 -0.39 -3.12 16 16 C -0.11 -1.62 9.96 -39.56 -0.39 -2.01 16 17 C 0.04 0.61 6.71 -39.26 -0.26 0.34 16 18 O -0.50 -7.30 13.51 -19.76 -0.27 -7.57 16 19 C -0.08 -1.50 9.98 -39.45 -0.39 -1.90 16 20 C -0.13 -2.55 5.54 -104.26 -0.58 -3.12 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.02 0.54 8.12 -51.93 -0.42 0.11 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 1.56 7.51 -51.93 -0.39 1.17 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.40 5.19 8.96 -40.82 -0.37 4.83 16 27 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 28 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.38 3.50 9.06 45.56 0.41 3.92 16 30 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 260.41 15.07 3.92 3.92 Total: -1.00 -31.44 260.41 -7.27 -38.71 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -2.84 Total: 5.30 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -3.42 Total: -18.29 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.36 Total: -38.29 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.27 Total: -7.57 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.44 -7.27 -38.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995700.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.569 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds