Wall clock time and date at job start Mon Mar 30 2020 02:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00203 * 2 1 4 4 H 1.48502 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47569 * 300.00492 * 3 2 1 6 6 H 1.48504 * 109.46948 * 60.00594 * 3 2 1 7 7 C 1.37880 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00128 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47107 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.46655 * 52.58011 * 10 9 7 12 12 C 1.53734 * 110.41329 * 290.16153 * 10 9 7 13 13 N 1.46536 * 105.20354 * 241.22470 * 12 10 9 14 14 C 1.39866 * 110.03911 * 0.02562 * 13 12 10 15 15 C 1.39638 * 129.26374 * 180.02562 * 14 13 12 16 16 C 1.37824 * 120.35540 * 179.97438 * 15 14 13 17 17 C 1.38717 * 120.16980 * 0.02562 * 16 15 14 18 18 O 1.36005 * 120.13889 * 180.02562 * 17 16 15 19 19 C 1.38635 * 119.71543 * 0.29427 * 17 16 15 20 20 C 1.38189 * 120.11295 * 359.42410 * 19 17 16 21 21 H 0.97002 * 119.99566 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47578 * 60.00130 * 9 7 2 23 23 H 1.09003 * 109.47354 * 300.00534 * 9 7 2 24 24 H 1.09004 * 110.29977 * 0.15636 * 12 10 9 25 25 H 1.08998 * 110.30062 * 122.29000 * 12 10 9 26 26 H 0.96996 * 124.97470 * 180.02562 * 13 12 10 27 27 H 1.08004 * 119.82514 * 359.97438 * 15 14 13 28 28 H 1.07999 * 119.91642 * 180.02562 * 16 15 14 29 29 H 0.96701 * 113.99782 * 90.00433 * 18 17 16 30 30 H 1.08001 * 119.94069 * 179.70250 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9645 -3.5486 0.8105 12 6 2.9711 -3.7470 -1.3530 13 7 2.6205 -5.0623 -1.8955 14 6 1.7770 -5.7376 -1.0074 15 6 1.2068 -7.0071 -1.1224 16 6 0.3934 -7.4984 -0.1241 17 6 0.1345 -6.7335 1.0038 18 8 -0.6679 -7.2191 1.9888 19 6 0.6925 -5.4698 1.1201 20 6 1.5128 -4.9796 0.1219 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5568 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.6224 -2.9580 -2.0195 25 1 4.0489 -3.6724 -1.2091 26 1 2.9283 -5.4132 -2.7458 27 1 1.4043 -7.6073 -1.9983 28 1 -0.0435 -8.4814 -0.2202 29 1 -0.1954 -7.7114 2.6740 30 1 0.4895 -4.8692 1.9945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995700.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:04 Heat of formation + Delta-G solvation = -42.740520 kcal Electronic energy + Delta-G solvation = -14270.089998 eV Core-core repulsion = 11835.913337 eV Total energy + Delta-G solvation = -2434.176661 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.37295 -38.96253 -36.15889 -35.16893 -33.41198 -30.93034 -29.26860 -27.97358 -24.92888 -23.82285 -22.55705 -21.22383 -18.91953 -18.46059 -18.24161 -16.72590 -16.65378 -16.06714 -15.86481 -15.26021 -14.61770 -14.35448 -14.07067 -13.77296 -13.40689 -13.03442 -12.91949 -12.83182 -12.64941 -12.38039 -12.00343 -11.59539 -11.35723 -10.96153 -10.72868 -10.57596 -9.68701 -8.20240 -8.08340 -6.30734 0.48696 0.57773 1.41385 1.41797 1.54957 2.41461 2.58459 2.82708 3.14753 3.44005 3.85816 3.93776 4.20586 4.34509 4.46456 4.54553 4.64669 4.89105 4.98010 5.13644 5.20958 5.30743 5.48910 5.51381 5.60762 5.69563 5.74991 5.82960 6.17041 6.24304 6.85847 7.02728 7.12207 7.38962 8.93383 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.039300 B = 0.007411 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.291465 B = 3777.057473 C = 4285.153482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.069 0.931 9 C 0.050 3.950 10 C -0.047 4.047 11 H 0.077 0.923 12 C 0.135 3.865 13 N -0.737 5.737 14 C 0.177 3.823 15 C -0.167 4.167 16 C -0.100 4.100 17 C 0.038 3.962 18 O -0.507 6.507 19 C -0.105 4.105 20 C -0.166 4.166 21 H 0.262 0.738 22 H -0.016 1.016 23 H -0.014 1.014 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.422 0.578 27 H 0.150 0.850 28 H 0.156 0.844 29 H 0.400 0.600 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -13.916 -1.385 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.088 0.912 9 C 0.012 3.988 10 C -0.066 4.066 11 H 0.095 0.905 12 C 0.010 3.990 13 N -0.371 5.371 14 C 0.073 3.927 15 C -0.190 4.190 16 C -0.119 4.119 17 C -0.008 4.008 18 O -0.318 6.318 19 C -0.124 4.124 20 C -0.171 4.171 21 H 0.071 0.929 22 H 0.002 0.998 23 H 0.004 0.996 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.262 0.738 27 H 0.168 0.832 28 H 0.173 0.827 29 H 0.257 0.743 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.111 -13.395 -1.750 14.444 hybrid contribution 0.360 0.941 0.177 1.023 sum 5.471 -12.454 -1.574 13.694 Atomic orbital electron populations 1.70144 1.08044 1.27642 1.51779 1.26020 0.95662 1.03494 0.94793 0.85380 0.79324 0.78676 0.77554 1.17983 1.20606 1.20741 1.21678 0.93719 0.91569 1.50173 0.91246 1.18910 0.93385 0.92145 0.94328 1.20675 0.96766 0.91743 0.97373 0.90492 1.21716 0.99094 0.84381 0.93797 1.44754 1.53254 1.16961 1.22142 1.18670 0.91336 0.92854 0.89840 1.20459 1.02426 0.94101 1.01983 1.21218 0.97229 1.00523 0.92901 1.18087 0.97863 0.92902 0.91981 1.84837 1.35533 1.74365 1.37098 1.20704 0.96424 0.96298 0.98962 1.20144 1.03192 0.97275 0.96503 0.92899 0.99781 0.99611 0.92379 0.90224 0.73836 0.83225 0.82674 0.74263 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.53 -29.83 8.59 25.60 0.22 -29.61 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 9 C 0.05 2.68 4.27 29.85 0.13 2.81 16 10 C -0.05 -2.00 2.98 -11.12 -0.03 -2.04 16 11 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 12 C 0.13 4.84 7.31 86.62 0.63 5.47 16 13 N -0.74 -22.49 6.54 -337.62 -2.21 -24.70 16 14 C 0.18 5.95 7.03 38.27 0.27 6.22 16 15 C -0.17 -4.56 10.07 22.51 0.23 -4.33 16 16 C -0.10 -2.68 9.96 22.29 0.22 -2.46 16 17 C 0.04 1.20 6.71 22.48 0.15 1.35 16 18 O -0.51 -14.04 13.51 -93.60 -1.26 -15.30 16 19 C -0.10 -3.95 9.98 22.35 0.22 -3.73 16 20 C -0.17 -6.57 5.54 -19.63 -0.11 -6.68 16 21 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 22 H -0.02 -0.98 8.12 -2.39 -0.02 -0.99 16 23 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 24 H 0.06 2.32 7.51 -2.39 -0.02 2.31 16 25 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.42 9.75 8.96 -92.71 -0.83 8.92 16 27 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.40 6.65 9.06 -74.06 -0.67 5.98 16 30 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -69.63 260.41 0.89 -68.74 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.34 Total: 15.52 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 2.39 Total: -32.65 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -1.92 Total: -82.27 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -1.26 Total: -15.30 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -69.63 0.89 -68.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995700.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.004 kcal (2) G-P(sol) polarization free energy of solvation -69.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds