Wall clock time and date at job start Mon Mar 30 2020 02:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86793 * 120.00015 * 2 1 4 4 H 1.48498 * 109.47316 * 274.64872 * 3 2 1 5 5 H 1.48495 * 109.47231 * 34.65125 * 3 2 1 6 6 H 1.48498 * 109.47015 * 154.65246 * 3 2 1 7 7 C 1.39865 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99360 * 162.16229 * 7 2 1 9 9 C 1.41197 * 120.00652 * 342.16332 * 7 2 1 10 10 C 1.40872 * 120.12877 * 335.11033 * 9 7 2 11 11 C 1.36569 * 120.17441 * 179.40131 * 10 9 7 12 12 C 1.38996 * 120.15420 * 0.48600 * 11 10 9 13 13 C 1.39829 * 120.36174 * 0.02562 * 12 11 10 14 14 C 1.37769 * 120.22029 * 359.54693 * 13 12 11 15 15 N 1.40193 * 119.12821 * 179.29417 * 13 12 11 16 16 C 1.46947 * 118.08624 * 294.32658 * 15 13 12 17 17 C 1.51730 * 110.32311 * 81.54798 * 16 15 13 18 18 C 1.52216 * 112.54057 * 296.40666 * 17 16 15 19 19 O 1.36513 * 120.19399 * 180.29542 * 12 11 10 20 20 H 0.96999 * 120.00226 * 359.97438 * 1 2 3 21 21 H 1.07991 * 119.91259 * 359.59625 * 10 9 7 22 22 H 1.08000 * 119.92396 * 180.29112 * 11 10 9 23 23 H 1.07992 * 120.32300 * 180.33956 * 14 13 12 24 24 H 0.97005 * 120.95439 * 114.34519 * 15 13 12 25 25 H 1.09005 * 109.32342 * 321.29106 * 16 15 13 26 26 H 1.08993 * 109.32929 * 201.81615 * 16 15 13 27 27 H 1.08997 * 108.86775 * 175.61582 * 17 16 15 28 28 H 1.09000 * 108.86539 * 57.19698 * 17 16 15 29 29 H 1.08997 * 109.11336 * 306.27813 * 18 17 16 30 30 H 1.09002 * 109.06187 * 187.17895 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3922 2.1031 -1.3954 5 1 1.4930 2.6222 0.7960 6 1 3.5862 1.4137 0.5994 7 6 2.0082 -1.2113 -0.0005 8 1 3.0493 -1.2336 -0.2871 9 6 1.3532 -2.4049 0.3735 10 6 0.2270 -2.3586 1.2185 11 6 -0.4146 -3.5115 1.5709 12 6 0.0465 -4.7374 1.1057 13 6 1.1694 -4.8011 0.2749 14 6 1.8230 -3.6469 -0.0973 15 7 1.6210 -6.0525 -0.1673 16 6 2.1467 -6.9914 0.8334 17 6 1.0076 -7.7178 1.5240 18 6 0.1099 -6.7769 2.3150 19 8 -0.5978 -5.8899 1.4526 20 1 -0.4850 0.8400 0.0004 21 1 -0.1318 -1.4086 1.5860 22 1 -1.2805 -3.4709 2.2152 23 1 2.6871 -3.6937 -0.7434 24 1 1.5878 -6.2915 -1.1068 25 1 2.7260 -6.4412 1.5750 26 1 2.7928 -7.7185 0.3416 27 1 1.4241 -8.4616 2.2032 28 1 0.4070 -8.2281 0.7710 29 1 0.7221 -6.1934 3.0026 30 1 -0.6069 -7.3659 2.8874 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261113906.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:41 Heat of formation + Delta-G solvation = -33.937830 kcal Electronic energy + Delta-G solvation = -14602.841668 eV Core-core repulsion = 12169.046721 eV Total energy + Delta-G solvation = -2433.794947 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72316 -38.17234 -36.39139 -35.28571 -32.72756 -31.39219 -29.17301 -26.94271 -26.14677 -22.92393 -22.07242 -21.94314 -19.27461 -18.50764 -17.27014 -17.10650 -16.55674 -15.90936 -15.61864 -15.21662 -14.61387 -14.32268 -14.03438 -13.87050 -13.52142 -13.07723 -12.82284 -12.68130 -12.35549 -12.08864 -11.82123 -11.58384 -11.46209 -11.03593 -10.59042 -9.65572 -9.23541 -8.66049 -8.50667 -6.32055 0.84003 1.06531 1.40102 1.48311 1.55913 2.21660 2.63066 2.96330 3.23005 3.69398 4.00718 4.18266 4.40363 4.44955 4.67202 4.76592 4.90367 4.93532 5.02339 5.09343 5.16536 5.27263 5.31373 5.52446 5.65591 5.97436 6.08309 6.16633 6.55703 6.65842 6.84467 6.92668 7.14775 7.36304 8.32111 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.057168 B = 0.007672 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.667757 B = 3648.901114 C = 3973.538792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.036 3.964 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.494 4.494 8 H 0.078 0.922 9 C 0.090 3.910 10 C -0.183 4.183 11 C -0.106 4.106 12 C -0.064 4.064 13 C 0.172 3.828 14 C -0.247 4.247 15 N -0.788 5.788 16 C 0.136 3.864 17 C -0.165 4.165 18 C 0.052 3.948 19 O -0.340 6.340 20 H 0.290 0.710 21 H 0.107 0.893 22 H 0.107 0.893 23 H 0.099 0.901 24 H 0.396 0.604 25 H 0.040 0.960 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -7.879 2.743 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.523 4.523 8 H 0.096 0.904 9 C 0.087 3.913 10 C -0.202 4.202 11 C -0.125 4.125 12 C -0.109 4.109 13 C 0.077 3.923 14 C -0.269 4.269 15 N -0.433 5.433 16 C 0.012 3.988 17 C -0.204 4.204 18 C -0.023 4.023 19 O -0.258 6.258 20 H 0.101 0.899 21 H 0.125 0.875 22 H 0.125 0.875 23 H 0.118 0.882 24 H 0.232 0.768 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.711 -7.810 2.851 8.745 hybrid contribution 0.214 0.785 -0.318 0.874 sum 2.926 -7.025 2.533 8.020 Atomic orbital electron populations 1.69913 1.09080 1.30768 1.35010 1.26798 0.95480 1.04624 0.91053 0.85169 0.79187 0.75795 0.79424 1.18692 1.18937 1.18172 1.19782 0.98476 0.92387 1.41654 0.90411 1.17879 0.91626 0.92798 0.89007 1.20874 1.00084 0.96627 1.02646 1.20570 0.99768 0.92016 1.00162 1.18893 0.98413 0.85330 1.08301 1.17694 0.91907 0.86500 0.96222 1.21127 1.04213 0.92300 1.09246 1.44047 1.77399 1.13524 1.08377 1.21021 0.94500 0.91768 0.91527 1.22299 0.98233 0.99032 1.00853 1.22662 0.96267 0.91746 0.91604 1.86102 1.43034 1.29672 1.66973 0.89945 0.87490 0.87499 0.88239 0.76765 0.94115 0.88385 0.87736 0.91632 0.94705 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.21 10.98 21.82 0.24 -42.97 16 2 C 0.04 1.81 5.13 85.23 0.44 2.25 16 3 Si 0.98 37.92 29.59 68.60 2.03 39.95 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.49 -26.80 9.03 23.39 0.21 -26.59 16 8 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 9 C 0.09 4.96 5.57 -21.26 -0.12 4.85 16 10 C -0.18 -9.92 8.62 22.52 0.19 -9.73 16 11 C -0.11 -5.32 9.93 22.06 0.22 -5.10 16 12 C -0.06 -3.05 5.78 22.84 0.13 -2.92 16 13 C 0.17 8.00 5.96 38.08 0.23 8.22 16 14 C -0.25 -12.55 9.74 22.81 0.22 -12.33 16 15 N -0.79 -29.06 5.44 -340.23 -1.85 -30.91 16 16 C 0.14 3.95 6.56 85.88 0.56 4.51 16 17 C -0.16 -4.30 5.88 29.92 0.18 -4.12 16 18 C 0.05 1.69 6.46 71.72 0.46 2.15 16 19 O -0.34 -14.62 10.09 -99.48 -1.00 -15.63 16 20 H 0.29 13.68 8.30 -92.71 -0.77 12.92 16 21 H 0.11 5.99 6.18 -2.91 -0.02 5.97 16 22 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 23 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 24 H 0.40 13.28 8.96 -92.70 -0.83 12.45 16 25 H 0.04 1.28 8.08 -2.38 -0.02 1.26 16 26 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.03 1.17 7.91 -2.39 -0.02 1.15 16 30 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -61.89 252.11 2.46 -59.43 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.32 Total: 28.94 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 2.73 Total: -38.81 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.61 Total: -73.88 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.00 Total: -15.63 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -61.89 2.46 -59.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261113906.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.492 kcal (2) G-P(sol) polarization free energy of solvation -61.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds