Wall clock time and date at job start Mon Mar 30 2020 03:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00363 * 2 1 4 4 H 1.48501 * 109.46877 * 269.43025 * 3 2 1 5 5 H 1.48500 * 109.46970 * 29.42954 * 3 2 1 6 6 H 1.48501 * 109.47071 * 149.43055 * 3 2 1 7 7 C 1.37877 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00071 * 13.94997 * 7 2 1 9 9 C 1.50699 * 120.00118 * 193.94914 * 7 2 1 10 10 C 1.50689 * 110.45808 * 295.13602 * 9 7 2 11 11 C 1.38677 * 120.42320 * 172.44407 * 10 9 7 12 12 C 1.38626 * 118.42407 * 180.24210 * 11 10 9 13 13 C 1.38223 * 119.16001 * 359.75192 * 12 11 10 14 14 N 1.31855 * 120.76693 * 359.97438 * 13 12 11 15 15 C 1.31890 * 121.72283 * 0.02562 * 14 13 12 16 16 C 1.54506 * 110.62505 * 57.82286 * 9 7 2 17 17 C 1.54481 * 104.06648 * 118.70071 * 16 9 7 18 18 O 1.44426 * 104.80214 * 336.02212 * 17 16 9 19 19 C 1.44423 * 105.27632 * 40.50752 * 18 17 16 20 20 H 0.97003 * 119.99706 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.78346 * 359.96952 * 11 10 9 22 22 H 1.07999 * 120.42020 * 179.72746 * 12 11 10 23 23 H 1.08005 * 119.61606 * 180.02562 * 13 12 11 24 24 H 1.08001 * 119.61153 * 179.97438 * 15 14 13 25 25 H 1.09005 * 110.50963 * 237.34203 * 16 9 7 26 26 H 1.09003 * 110.51642 * 0.05584 * 16 9 7 27 27 H 1.08997 * 110.37434 * 217.18740 * 17 16 9 28 28 H 1.09009 * 110.46321 * 94.89666 * 17 16 9 29 29 H 1.09002 * 110.37582 * 200.65987 * 19 18 17 30 30 H 1.09004 * 110.37152 * 78.31910 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.5088 2.0393 -1.4000 5 1 1.4408 2.6561 0.6879 6 1 3.5407 1.4435 0.7121 7 6 2.0045 -1.1941 -0.0005 8 1 1.4884 -2.1155 -0.2264 9 6 3.4782 -1.2135 0.3141 10 6 4.2524 -0.4705 -0.7438 11 6 5.6075 -0.2254 -0.5802 12 6 6.2780 0.4663 -1.5770 13 6 5.5798 0.8813 -2.6954 14 7 4.2922 0.6257 -2.8200 15 6 3.6223 -0.0296 -1.8919 16 6 3.7451 -0.6043 1.7086 17 6 4.3831 -1.7618 2.5082 18 8 3.9252 -2.9623 1.8485 19 6 3.9864 -2.6673 0.4361 20 1 -0.4850 0.8401 0.0004 21 1 6.1271 -0.5615 0.3049 22 1 7.3326 0.6787 -1.4808 23 1 6.0950 1.4204 -3.4767 24 1 2.5681 -0.2200 -2.0289 25 1 4.4372 0.2345 1.6328 26 1 2.8106 -0.2889 2.1729 27 1 4.0399 -1.7428 3.5426 28 1 5.4706 -1.6984 2.4687 29 1 3.3386 -3.3438 -0.1214 30 1 5.0129 -2.7416 0.0771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118850.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:15 Heat of formation + Delta-G solvation = -18.828254 kcal Electronic energy + Delta-G solvation = -15304.989437 eV Core-core repulsion = 12871.849690 eV Total energy + Delta-G solvation = -2433.139747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.61389 -39.77123 -35.84588 -34.00661 -32.73363 -31.10829 -29.76520 -27.14820 -24.35548 -24.06831 -23.31047 -21.14517 -19.07971 -17.96017 -17.24665 -16.85173 -16.56413 -16.35442 -15.74616 -15.13327 -14.98013 -14.76118 -14.24036 -13.87983 -13.56848 -13.10606 -12.86851 -12.63923 -12.40519 -12.15025 -11.83482 -11.43540 -11.09484 -10.80770 -10.52648 -10.46604 -10.21612 -9.58450 -8.38099 -6.38205 0.30919 0.42348 1.26706 1.35572 1.38880 2.27032 2.93104 2.95816 3.23601 3.70740 4.00347 4.10514 4.13236 4.22781 4.26207 4.32897 4.37290 4.49819 4.64661 4.84843 4.93411 5.00553 5.06997 5.11982 5.28297 5.34007 5.46986 5.65059 5.93924 6.07879 6.24712 6.67086 7.17996 7.25306 8.76834 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.018848 C = 0.012530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.118209 B = 1485.202591 C = 2234.155468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.039 3.961 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.310 1.310 6 H -0.212 1.212 7 C -0.507 4.507 8 H 0.037 0.963 9 C 0.049 3.951 10 C -0.117 4.117 11 C -0.087 4.087 12 C -0.162 4.162 13 C 0.068 3.932 14 N -0.519 5.519 15 C 0.081 3.919 16 C -0.148 4.148 17 C 0.049 3.951 18 O -0.397 6.397 19 C 0.075 3.925 20 H 0.265 0.735 21 H 0.157 0.843 22 H 0.176 0.824 23 H 0.182 0.818 24 H 0.134 0.866 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.860 1.605 1.020 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.160 4.160 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.238 1.238 6 H -0.135 1.135 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.120 4.120 11 C -0.113 4.113 12 C -0.181 4.181 13 C -0.090 4.090 14 N -0.228 5.228 15 C -0.074 4.074 16 C -0.186 4.186 17 C -0.027 4.027 18 O -0.316 6.316 19 C -0.002 4.002 20 H 0.074 0.926 21 H 0.175 0.825 22 H 0.194 0.806 23 H 0.199 0.801 24 H 0.151 0.849 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.181 1.773 0.374 15.289 hybrid contribution -0.455 0.697 0.389 0.918 sum 14.726 2.469 0.763 14.952 Atomic orbital electron populations 1.70076 1.08229 1.27903 1.51095 1.25605 0.94813 1.01815 0.93754 0.86829 0.81534 0.80072 0.79099 1.19755 1.23832 1.13482 1.20938 0.92300 0.93582 1.47589 0.94458 1.18770 0.93177 0.92748 0.90609 1.21222 0.95192 0.98713 0.96848 1.21836 0.92783 0.96568 1.00089 1.22486 1.02861 0.98731 0.94061 1.23361 0.89604 0.97621 0.98382 1.67706 1.10821 1.13332 1.30951 1.22714 1.00278 0.93970 0.90412 1.23492 1.00485 0.98774 0.95865 1.23554 0.98966 0.82980 0.97246 1.89017 1.87869 1.36106 1.18615 1.23370 0.99545 0.95052 0.82224 0.92605 0.82540 0.80637 0.80081 0.84884 0.90041 0.93055 0.88605 0.89663 0.91140 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.96 21.45 0.30 -57.60 16 2 C 0.04 2.22 4.43 84.65 0.38 2.60 16 3 Si 0.90 43.45 22.47 68.60 1.54 45.00 16 4 H -0.27 -13.50 6.34 99.48 0.63 -12.87 16 5 H -0.31 -15.50 7.11 99.48 0.71 -14.79 16 6 H -0.21 -8.97 4.21 99.48 0.42 -8.55 16 7 C -0.51 -27.72 7.32 25.60 0.19 -27.53 16 8 H 0.04 2.30 7.78 -2.91 -0.02 2.28 16 9 C 0.05 2.08 0.55 -52.66 -0.03 2.06 16 10 C -0.12 -4.60 2.83 -19.78 -0.06 -4.65 16 11 C -0.09 -2.57 8.26 22.47 0.19 -2.38 16 12 C -0.16 -4.03 10.11 22.36 0.23 -3.80 16 13 C 0.07 2.01 11.18 84.69 0.95 2.96 16 14 N -0.52 -20.81 10.34 -195.84 -2.03 -22.84 16 15 C 0.08 3.57 6.70 84.67 0.57 4.14 16 16 C -0.15 -5.65 4.11 31.61 0.13 -5.52 16 17 C 0.05 1.54 7.63 72.49 0.55 2.09 16 18 O -0.40 -15.45 11.65 -148.98 -1.74 -17.18 16 19 C 0.07 2.88 6.66 72.49 0.48 3.36 16 20 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 21 H 0.16 3.60 7.78 -2.91 -0.02 3.58 16 22 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 23 H 0.18 3.86 8.06 -2.91 -0.02 3.83 16 24 H 0.13 6.90 5.53 -2.91 -0.02 6.88 16 25 H 0.08 2.75 5.58 -2.38 -0.01 2.74 16 26 H 0.05 2.24 6.81 -2.39 -0.02 2.23 16 27 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.07 2.93 7.68 -2.39 -0.02 2.92 16 30 H 0.07 2.31 7.40 -2.38 -0.02 2.29 16 Total: -1.00 -69.04 235.15 2.42 -66.62 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.77 Total: 12.69 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 3.57 Total: -26.68 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.73 Total: -80.44 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -1.74 Total: -17.18 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.54 Total: 45.00 kcal Total: -69.04 2.42 -66.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118850.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.792 kcal (2) G-P(sol) polarization free energy of solvation -69.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds