Wall clock time and date at job start Mon Mar 30 2020 02:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99749 * 2 1 4 4 H 1.48492 * 109.47435 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47075 * 120.00070 * 3 2 1 6 6 H 1.48499 * 109.46713 * 239.99380 * 3 2 1 7 7 C 1.37869 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99855 * 186.36985 * 7 2 1 9 9 C 1.50698 * 120.00309 * 6.37288 * 7 2 1 10 10 N 1.46500 * 113.00058 * 58.46978 * 9 7 2 11 11 C 1.39680 * 119.99564 * 61.38753 * 10 9 7 12 12 C 1.38902 * 120.07561 * 5.42003 * 11 10 9 13 13 C 1.38111 * 119.92086 * 179.77194 * 12 11 10 14 14 C 1.38283 * 120.07393 * 0.50753 * 13 12 11 15 15 C 1.38281 * 120.15130 * 359.74567 * 14 13 12 16 16 C 1.38104 * 120.07691 * 359.97438 * 15 14 13 17 17 C 1.54036 * 113.81536 * 286.64591 * 9 7 2 18 18 O 1.44447 * 85.42594 * 223.23582 * 17 9 7 19 19 C 1.44172 * 93.37770 * 24.08945 * 18 17 9 20 20 H 0.97000 * 119.99678 * 354.97991 * 1 2 3 21 21 H 0.96997 * 120.00349 * 241.38879 * 10 9 7 22 22 H 1.08000 * 120.03956 * 0.02562 * 12 11 10 23 23 H 1.08001 * 119.96078 * 180.25398 * 13 12 11 24 24 H 1.07999 * 119.91882 * 179.72583 * 14 13 12 25 25 H 1.07999 * 119.96445 * 180.02562 * 15 14 13 26 26 H 1.07998 * 120.04008 * 180.02562 * 16 15 14 27 27 H 1.09006 * 113.86456 * 337.34417 * 17 9 7 28 28 H 1.09000 * 113.86562 * 109.04913 * 17 9 7 29 29 H 1.09000 * 113.86614 * 221.76639 * 19 18 17 30 30 H 1.08997 * 113.86913 * 90.06488 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6963 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0796 -1.1968 0.1043 9 6 1.2580 -2.4951 -0.1437 10 7 0.4761 -2.5724 -1.3802 11 6 1.1188 -2.5023 -2.6184 12 6 2.5060 -2.4726 -2.6819 13 6 3.1383 -2.4080 -3.9081 14 6 2.3917 -2.3622 -5.0712 15 6 1.0103 -2.3862 -5.0112 16 6 0.3717 -2.4566 -3.7887 17 6 0.4716 -2.9040 1.1161 18 8 0.9875 -4.2300 0.8669 19 6 2.1226 -3.7414 0.1244 20 1 -0.4850 0.8369 0.0735 21 1 -0.4879 -2.6723 -1.3391 22 1 3.0896 -2.5042 -1.7737 23 1 4.2169 -2.3890 -3.9584 24 1 2.8886 -2.3072 -6.0285 25 1 0.4302 -2.3507 -5.9215 26 1 -0.7071 -2.4758 -3.7426 27 1 0.8443 -2.4513 2.0349 28 1 -0.6098 -2.8225 1.0067 29 1 2.3480 -4.3225 -0.7698 30 1 3.0006 -3.5449 0.7396 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137463.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:24 Heat of formation + Delta-G solvation = 16.969769 kcal Electronic energy + Delta-G solvation = -14942.436737 eV Core-core repulsion = 12510.849309 eV Total energy + Delta-G solvation = -2431.587428 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60023 -37.97944 -33.99513 -32.35426 -30.10931 -28.83875 -27.01095 -25.47494 -24.41431 -21.75286 -21.05817 -18.91759 -17.26618 -16.24839 -15.42221 -15.20171 -15.00296 -14.28588 -14.16041 -13.62531 -13.09730 -12.55382 -12.47662 -12.29168 -11.66848 -11.42296 -11.04910 -10.84060 -10.67456 -10.59282 -10.16726 -9.92446 -9.47125 -9.03450 -8.67938 -8.46628 -8.09628 -6.42820 -6.07876 -4.33961 2.27604 2.53111 3.21769 3.27511 3.31756 4.26878 4.45282 4.74588 4.90685 5.16156 5.67474 5.70767 5.84498 5.97951 6.21355 6.25779 6.29730 6.43515 6.54260 6.60133 6.72904 6.85420 7.09724 7.16505 7.28392 7.35138 7.43406 7.61241 7.76970 7.96247 8.51255 8.72583 8.94751 9.36466 10.81794 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.021264 B = 0.014154 C = 0.010375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.437180 B = 1977.818768 C = 2698.059578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.086 3.914 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.254 3.746 10 N -0.692 5.692 11 C 0.256 3.744 12 C -0.183 4.183 13 C -0.083 4.083 14 C -0.211 4.211 15 C -0.080 4.080 16 C -0.219 4.219 17 C 0.049 3.951 18 O -0.406 6.406 19 C 0.016 3.984 20 H 0.265 0.735 21 H 0.386 0.614 22 H 0.128 0.872 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 -3.149 -3.835 5.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.120 4.120 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.168 3.832 10 N -0.314 5.314 11 C 0.147 3.853 12 C -0.206 4.206 13 C -0.102 4.102 14 C -0.232 4.232 15 C -0.099 4.099 16 C -0.243 4.243 17 C -0.028 4.028 18 O -0.326 6.326 19 C -0.063 4.063 20 H 0.074 0.926 21 H 0.220 0.780 22 H 0.146 0.854 23 H 0.125 0.875 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.757 -3.275 -3.601 5.175 hybrid contribution 0.030 1.311 -0.038 1.312 sum 1.787 -1.964 -3.639 4.505 Atomic orbital electron populations 1.69886 1.06099 1.27513 1.47085 1.24929 0.94760 0.99158 0.93182 0.86666 0.79858 0.82737 0.78932 1.21234 1.20076 1.19786 1.21189 0.93766 0.90077 1.52425 0.91687 1.20360 0.88118 0.92478 0.82243 1.44913 1.07988 1.76356 1.02098 1.17772 0.91953 0.89921 0.85642 1.20823 0.93158 1.08679 0.97935 1.20796 0.98582 0.98322 0.92480 1.20578 0.93927 1.11330 0.97328 1.20616 0.94378 0.98622 0.96245 1.20477 0.98645 1.13293 0.91840 1.24241 0.99066 0.80153 0.99349 1.89505 1.39794 1.27761 1.75535 1.24561 0.90798 0.96242 0.94661 0.92568 0.78032 0.85438 0.87515 0.87963 0.87673 0.87494 0.90234 0.90738 0.90884 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.84 12.78 55.43 0.71 -22.13 16 2 C 0.09 2.20 5.39 -17.82 -0.10 2.11 16 3 Si 0.89 20.39 29.55 -169.99 -5.02 15.37 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.54 -13.36 6.62 -34.44 -0.23 -13.58 16 8 H 0.07 1.61 7.76 -52.48 -0.41 1.20 16 9 C 0.25 5.80 0.34 -131.89 -0.05 5.75 16 10 N -0.69 -15.44 5.03 -53.23 -0.27 -15.71 16 11 C 0.26 5.54 6.39 -83.79 -0.54 5.00 16 12 C -0.18 -3.84 8.05 -39.38 -0.32 -4.16 16 13 C -0.08 -1.54 10.04 -39.61 -0.40 -1.94 16 14 C -0.21 -3.71 10.04 -39.55 -0.40 -4.10 16 15 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 16 C -0.22 -4.32 9.90 -39.38 -0.39 -4.71 16 17 C 0.05 1.09 8.27 37.64 0.31 1.40 16 18 O -0.41 -9.01 12.46 -35.23 -0.44 -9.45 16 19 C 0.02 0.33 7.26 37.64 0.27 0.60 16 20 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 21 H 0.39 8.42 8.66 -40.82 -0.35 8.07 16 22 H 0.13 2.74 5.14 -52.49 -0.27 2.47 16 23 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 24 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 25 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 26 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 27 H 0.08 1.76 8.09 -51.93 -0.42 1.34 16 28 H 0.07 1.63 8.08 -51.93 -0.42 1.21 16 29 H 0.07 1.47 7.35 -51.93 -0.38 1.09 16 30 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 LS Contribution 257.18 15.07 3.88 3.88 Total: -1.00 -26.65 257.18 -6.86 -33.51 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -3.50 Total: 9.97 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.22 Total: -15.44 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.44 Total: -37.84 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.44 Total: -9.45 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.65 -6.86 -33.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137463.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.484 kcal (2) G-P(sol) polarization free energy of solvation -26.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds