Wall clock time and date at job start Mon Mar 30 2020 02:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99749 * 2 1 4 4 H 1.48492 * 109.47435 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47075 * 120.00070 * 3 2 1 6 6 H 1.48499 * 109.46713 * 239.99380 * 3 2 1 7 7 C 1.37869 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99855 * 186.36985 * 7 2 1 9 9 C 1.50698 * 120.00309 * 6.37288 * 7 2 1 10 10 N 1.46500 * 113.00058 * 58.46978 * 9 7 2 11 11 C 1.39680 * 119.99564 * 61.38753 * 10 9 7 12 12 C 1.38902 * 120.07561 * 5.42003 * 11 10 9 13 13 C 1.38111 * 119.92086 * 179.77194 * 12 11 10 14 14 C 1.38283 * 120.07393 * 0.50753 * 13 12 11 15 15 C 1.38281 * 120.15130 * 359.74567 * 14 13 12 16 16 C 1.38104 * 120.07691 * 359.97438 * 15 14 13 17 17 C 1.54036 * 113.81536 * 286.64591 * 9 7 2 18 18 O 1.44447 * 85.42594 * 223.23582 * 17 9 7 19 19 C 1.44172 * 93.37770 * 24.08945 * 18 17 9 20 20 H 0.97000 * 119.99678 * 354.97991 * 1 2 3 21 21 H 0.96997 * 120.00349 * 241.38879 * 10 9 7 22 22 H 1.08000 * 120.03956 * 0.02562 * 12 11 10 23 23 H 1.08001 * 119.96078 * 180.25398 * 13 12 11 24 24 H 1.07999 * 119.91882 * 179.72583 * 14 13 12 25 25 H 1.07999 * 119.96445 * 180.02562 * 15 14 13 26 26 H 1.07998 * 120.04008 * 180.02562 * 16 15 14 27 27 H 1.09006 * 113.86456 * 337.34417 * 17 9 7 28 28 H 1.09000 * 113.86562 * 109.04913 * 17 9 7 29 29 H 1.09000 * 113.86614 * 221.76639 * 19 18 17 30 30 H 1.08997 * 113.86913 * 90.06488 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6963 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0796 -1.1968 0.1043 9 6 1.2580 -2.4951 -0.1437 10 7 0.4761 -2.5724 -1.3802 11 6 1.1188 -2.5023 -2.6184 12 6 2.5060 -2.4726 -2.6819 13 6 3.1383 -2.4080 -3.9081 14 6 2.3917 -2.3622 -5.0712 15 6 1.0103 -2.3862 -5.0112 16 6 0.3717 -2.4566 -3.7887 17 6 0.4716 -2.9040 1.1161 18 8 0.9875 -4.2300 0.8669 19 6 2.1226 -3.7414 0.1244 20 1 -0.4850 0.8369 0.0735 21 1 -0.4879 -2.6723 -1.3391 22 1 3.0896 -2.5042 -1.7737 23 1 4.2169 -2.3890 -3.9584 24 1 2.8886 -2.3072 -6.0285 25 1 0.4302 -2.3507 -5.9215 26 1 -0.7071 -2.4758 -3.7426 27 1 0.8443 -2.4513 2.0349 28 1 -0.6098 -2.8225 1.0067 29 1 2.3480 -4.3225 -0.7698 30 1 3.0006 -3.5449 0.7396 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137463.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:24 Heat of formation + Delta-G solvation = 0.726005 kcal Electronic energy + Delta-G solvation = -14943.141120 eV Core-core repulsion = 12510.849309 eV Total energy + Delta-G solvation = -2432.291811 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.30957 -39.50194 -35.67958 -34.17621 -31.60598 -30.50529 -28.66488 -27.19807 -26.28326 -23.24743 -22.57765 -20.65977 -19.03167 -17.86400 -17.13173 -16.91352 -16.62225 -16.04016 -15.87947 -15.27056 -14.58298 -14.22357 -13.97601 -13.86584 -13.47856 -13.11017 -12.87563 -12.66900 -12.42073 -12.09368 -11.70101 -11.54914 -11.27606 -10.75585 -10.54873 -10.20133 -9.57316 -8.26090 -7.78452 -6.29430 0.79280 1.04940 1.39385 1.43976 1.47832 2.38864 2.76942 3.05573 3.25987 3.38164 4.06846 4.28251 4.36472 4.56992 4.57811 4.60401 4.73253 4.83521 4.87989 5.03082 5.17935 5.31882 5.40917 5.45045 5.67846 5.81023 5.84017 5.96181 6.04410 6.36030 6.66547 6.98080 7.27995 7.42691 8.87755 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.021264 B = 0.014154 C = 0.010375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.437180 B = 1977.818768 C = 2698.059578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.047 3.953 3 Si 0.939 3.061 4 H -0.289 1.289 5 H -0.268 1.268 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.247 3.753 10 N -0.701 5.701 11 C 0.228 3.772 12 C -0.206 4.206 13 C -0.087 4.087 14 C -0.206 4.206 15 C -0.080 4.080 16 C -0.232 4.232 17 C 0.053 3.947 18 O -0.413 6.413 19 C 0.023 3.977 20 H 0.261 0.739 21 H 0.384 0.616 22 H 0.115 0.885 23 H 0.132 0.868 24 H 0.136 0.864 25 H 0.138 0.862 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 -3.096 -5.252 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.157 4.157 3 Si 0.765 3.235 4 H -0.215 1.215 5 H -0.192 1.192 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.079 0.921 9 C 0.160 3.840 10 N -0.323 5.323 11 C 0.121 3.879 12 C -0.228 4.228 13 C -0.106 4.106 14 C -0.226 4.226 15 C -0.098 4.098 16 C -0.255 4.255 17 C -0.025 4.025 18 O -0.332 6.332 19 C -0.054 4.054 20 H 0.070 0.930 21 H 0.217 0.783 22 H 0.133 0.867 23 H 0.150 0.850 24 H 0.154 0.846 25 H 0.156 0.844 26 H 0.131 0.869 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.591 -3.228 -5.031 6.515 hybrid contribution -0.183 1.254 0.304 1.303 sum 2.408 -1.974 -4.727 5.661 Atomic orbital electron populations 1.69972 1.06857 1.27611 1.48389 1.25468 0.95364 1.01395 0.93436 0.85910 0.78767 0.80067 0.78710 1.21463 1.19247 1.20483 1.21410 0.93693 0.91133 1.51597 0.92123 1.20371 0.88603 0.92302 0.82687 1.44750 1.07732 1.77549 1.02269 1.18079 0.92576 0.91370 0.85882 1.20886 0.93030 1.10283 0.98639 1.21144 1.00118 0.97331 0.91974 1.21023 0.93972 1.09237 0.98391 1.21037 0.95025 0.97081 0.96667 1.20727 0.99167 1.13470 0.92167 1.24166 0.98926 0.80188 0.99188 1.89487 1.40332 1.27719 1.75688 1.24580 0.90654 0.95339 0.94873 0.92955 0.78331 0.86699 0.85029 0.84599 0.84421 0.86900 0.90393 0.90929 0.90261 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.03 12.78 21.44 0.27 -46.76 16 2 C 0.05 2.40 5.39 84.65 0.46 2.85 16 3 Si 0.94 41.66 29.55 68.60 2.03 43.69 16 4 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -26.86 6.62 25.60 0.17 -26.69 16 8 H 0.06 2.99 7.76 -2.91 -0.02 2.97 16 9 C 0.25 11.29 0.34 3.56 0.00 11.29 16 10 N -0.70 -31.43 5.03 -333.37 -1.68 -33.11 16 11 C 0.23 9.76 6.39 38.21 0.24 10.01 16 12 C -0.21 -8.45 8.05 22.40 0.18 -8.27 16 13 C -0.09 -3.02 10.04 22.25 0.22 -2.80 16 14 C -0.21 -6.50 10.04 22.29 0.22 -6.27 16 15 C -0.08 -2.59 10.04 22.25 0.22 -2.37 16 16 C -0.23 -8.85 9.90 22.40 0.22 -8.63 16 17 C 0.05 2.35 8.27 72.30 0.60 2.95 16 18 O -0.41 -18.14 12.46 -148.98 -1.86 -20.00 16 19 C 0.02 0.97 7.26 72.29 0.52 1.50 16 20 H 0.26 13.47 8.32 -92.71 -0.77 12.70 16 21 H 0.38 17.02 8.66 -92.71 -0.80 16.22 16 22 H 0.12 4.92 5.14 -2.91 -0.01 4.90 16 23 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 24 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 25 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 26 H 0.11 4.05 8.06 -2.91 -0.02 4.02 16 27 H 0.08 3.46 8.09 -2.38 -0.02 3.44 16 28 H 0.07 3.22 8.08 -2.39 -0.02 3.20 16 29 H 0.08 3.17 7.35 -2.39 -0.02 3.15 16 30 H 0.08 3.28 8.09 -2.39 -0.02 3.26 16 Total: -1.00 -54.97 257.18 2.17 -52.80 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.34 Total: 29.81 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 3.07 Total: -26.43 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.40 Total: -79.87 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.86 Total: -20.00 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -54.97 2.17 -52.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137463.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.523 kcal (2) G-P(sol) polarization free energy of solvation -54.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds