Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86799 * 120.00276 * 2 1 4 4 H 1.48496 * 109.47060 * 267.24786 * 3 2 1 5 5 H 1.48509 * 109.47046 * 27.24121 * 3 2 1 6 6 H 1.48498 * 109.47153 * 147.24162 * 3 2 1 7 7 C 1.39861 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99937 * 340.54555 * 7 2 1 9 9 C 1.41140 * 120.00132 * 160.54000 * 7 2 1 10 10 C 1.40881 * 120.15128 * 327.66951 * 9 7 2 11 11 C 1.36343 * 119.83696 * 179.97438 * 10 9 7 12 12 C 1.39570 * 120.15324 * 359.97438 * 11 10 9 13 13 N 1.38864 * 119.83621 * 179.97438 * 12 11 10 14 14 C 1.47470 * 111.00260 * 312.56411 * 13 12 11 15 15 C 1.53510 * 87.93359 * 221.29610 * 14 13 12 16 16 O 1.42898 * 114.34650 * 139.68265 * 15 14 13 17 17 C 1.47481 * 110.99709 * 216.59048 * 13 12 11 18 18 C 1.39569 * 120.32223 * 0.02562 * 12 11 10 19 19 C 1.36335 * 120.15900 * 359.97438 * 18 12 11 20 20 H 0.97002 * 119.99765 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.08729 * 359.70055 * 10 9 7 22 22 H 1.07994 * 119.92218 * 179.97438 * 11 10 9 23 23 H 1.09002 * 113.47912 * 336.06476 * 14 13 12 24 24 H 1.09004 * 113.47985 * 106.52974 * 14 13 12 25 25 H 1.09000 * 114.17454 * 272.37608 * 15 14 13 26 26 H 0.96706 * 113.99694 * 86.07245 * 16 15 14 27 27 H 1.09000 * 113.47364 * 253.47205 * 17 13 12 28 28 H 1.08989 * 113.47948 * 23.88230 * 17 13 12 29 29 H 1.08001 * 119.91835 * 179.97438 * 18 12 11 30 30 H 1.08001 * 120.08609 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.5489 2.0127 -1.3984 5 1 1.4126 2.6689 0.6409 6 1 3.5103 1.4576 0.7576 7 6 2.0084 -1.2113 0.0005 8 1 1.5146 -2.1197 0.3125 9 6 3.3593 -1.2464 -0.4066 10 6 3.8232 -0.3583 -1.3970 11 6 5.1296 -0.3974 -1.7851 12 6 6.0066 -1.3142 -1.2034 13 7 7.3358 -1.3487 -1.6041 14 6 7.4447 -1.3483 -3.0747 15 6 8.5626 -2.3912 -2.9368 16 8 8.5200 -3.4332 -3.9137 17 6 7.8464 -2.7322 -1.6225 18 6 5.5540 -2.1971 -0.2217 19 6 4.2503 -2.1691 0.1761 20 1 -0.4850 0.8401 -0.0004 21 1 3.1448 0.3489 -1.8508 22 1 5.4866 0.2825 -2.5444 23 1 6.5549 -1.7292 -3.5762 24 1 7.7859 -0.3976 -3.4847 25 1 9.5571 -1.9648 -2.8056 26 1 8.9718 -3.2158 -4.7406 27 1 8.5281 -2.9544 -0.8015 28 1 7.0639 -3.4824 -1.7353 29 1 6.2382 -2.9041 0.2237 30 1 3.9012 -2.8531 0.9355 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158098.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = -9.887351 kcal Electronic energy + Delta-G solvation = -14344.855867 eV Core-core repulsion = 11912.103827 eV Total energy + Delta-G solvation = -2432.752040 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.83755 -39.12603 -36.73845 -35.31015 -32.31719 -31.88774 -28.87336 -27.16841 -25.40986 -23.09533 -22.24957 -20.92641 -19.36993 -19.01202 -17.83961 -17.02616 -16.45212 -15.86883 -15.64645 -15.07725 -14.77623 -14.40380 -14.28997 -13.90549 -13.78730 -13.29137 -13.17069 -12.64642 -12.58459 -12.19789 -11.98579 -11.72527 -11.34575 -11.05692 -10.80725 -10.68121 -9.70347 -8.92673 -8.91283 -6.43729 0.64662 0.80087 1.24628 1.36140 1.45844 2.10493 2.49353 3.01210 3.27833 3.46028 3.57256 4.04720 4.09682 4.23571 4.37656 4.45669 4.61308 4.63304 4.72575 4.76826 4.95916 5.01389 5.12202 5.23232 5.43921 5.59498 5.86626 5.99014 6.06837 6.26805 6.42743 6.73737 6.83431 6.91486 8.17775 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.054998 B = 0.007391 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.984454 B = 3787.503642 C = 3977.131511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.051 3.949 3 Si 0.962 3.038 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.488 4.488 8 H 0.057 0.943 9 C 0.061 3.939 10 C -0.231 4.231 11 C -0.095 4.095 12 C -0.045 4.045 13 N -0.426 5.426 14 C -0.030 4.030 15 C 0.092 3.908 16 O -0.573 6.573 17 C 0.002 3.998 18 C -0.101 4.101 19 C -0.201 4.201 20 H 0.293 0.707 21 H 0.103 0.897 22 H 0.120 0.880 23 H 0.062 0.938 24 H 0.101 0.899 25 H 0.125 0.875 26 H 0.401 0.599 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.126 0.874 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.436 -0.378 -6.234 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.164 4.164 3 Si 0.785 3.215 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.518 4.518 8 H 0.075 0.925 9 C 0.058 3.942 10 C -0.251 4.251 11 C -0.115 4.115 12 C -0.141 4.141 13 N -0.143 5.143 14 C -0.158 4.158 15 C 0.033 3.967 16 O -0.381 6.381 17 C -0.126 4.126 18 C -0.121 4.121 19 C -0.221 4.221 20 H 0.104 0.896 21 H 0.121 0.879 22 H 0.138 0.862 23 H 0.080 0.920 24 H 0.119 0.881 25 H 0.142 0.858 26 H 0.252 0.748 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.156 -0.081 -5.363 16.077 hybrid contribution -0.787 0.271 -0.491 0.967 sum 14.369 0.190 -5.854 15.517 Atomic orbital electron populations 1.69769 1.09045 1.31389 1.37451 1.26735 0.95236 1.03920 0.90465 0.85591 0.78958 0.76930 0.80033 1.17907 1.19841 1.18735 1.19356 0.95078 0.95846 1.41482 0.92512 1.17900 0.92848 0.92537 0.90911 1.20945 0.96553 1.05383 1.02229 1.20427 0.92704 0.98482 0.99919 1.19039 0.90157 1.01548 1.03351 1.66063 1.14547 1.21450 1.12287 1.24654 0.99898 1.01821 0.89421 1.23361 0.97969 0.87086 0.88304 1.86496 1.80635 1.41726 1.29225 1.24068 0.99371 0.90649 0.98486 1.20601 0.95408 0.98337 0.97754 1.20909 0.93537 1.04288 1.03364 0.89620 0.87936 0.86173 0.91975 0.88083 0.85762 0.74849 0.87745 0.91752 0.85643 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.37 13.93 21.82 0.30 -47.07 16 2 C 0.05 2.77 5.37 85.22 0.46 3.23 16 3 Si 0.96 43.85 24.89 68.60 1.71 45.56 16 4 H -0.25 -10.94 6.35 99.48 0.63 -10.31 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 6 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.49 -28.02 9.53 23.38 0.22 -27.80 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 9 C 0.06 3.19 5.02 -21.27 -0.11 3.08 16 10 C -0.23 -11.25 7.27 22.47 0.16 -11.09 16 11 C -0.10 -4.07 8.94 22.15 0.20 -3.87 16 12 C -0.04 -1.79 5.34 38.67 0.21 -1.58 16 13 N -0.43 -13.73 6.49 -725.24 -4.71 -18.44 16 14 C -0.03 -0.80 6.51 83.57 0.54 -0.25 16 15 C 0.09 1.95 5.56 30.94 0.17 2.12 16 16 O -0.57 -11.70 13.71 -148.98 -2.04 -13.74 16 17 C 0.00 0.05 6.28 83.57 0.52 0.57 16 18 C -0.10 -4.20 8.68 22.15 0.19 -4.00 16 19 C -0.20 -9.55 9.74 22.47 0.22 -9.33 16 20 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 21 H 0.10 4.98 4.96 -2.91 -0.01 4.97 16 22 H 0.12 4.47 7.57 -2.91 -0.02 4.44 16 23 H 0.06 1.89 7.64 -2.39 -0.02 1.87 16 24 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.40 3.94 9.12 -74.05 -0.68 3.26 16 27 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.06 2.01 7.25 -2.39 -0.02 1.99 16 29 H 0.13 4.45 7.10 -2.91 -0.02 4.43 16 30 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -64.20 250.29 -1.55 -65.75 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.40 Total: 16.85 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 2.79 Total: -48.91 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -4.41 Total: -65.51 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -2.04 Total: -13.74 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.71 Total: 45.56 kcal Total: -64.20 -1.55 -65.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158098.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.863 kcal (2) G-P(sol) polarization free energy of solvation -64.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds