Wall clock time and date at job start Mon Mar 30 2020 03:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09002 * 110.30763 * 60.72335 * 9 7 2 11 11 C 1.54476 * 110.34064 * 183.00734 * 9 7 2 12 12 C 1.54484 * 101.84561 * 144.35703 * 11 9 7 13 13 C 1.51235 * 104.93221 * 334.52903 * 12 11 9 14 14 O 1.34946 * 142.29132 * 196.82057 * 13 12 11 15 15 C 1.33902 * 107.73524 * 179.97438 * 14 13 12 16 16 C 1.50700 * 125.62084 * 180.02562 * 15 14 13 17 17 C 1.52998 * 117.49742 * 8.73062 * 16 15 14 18 18 C 1.52996 * 117.50152 * 300.06631 * 16 15 14 19 19 N 1.30172 * 108.76379 * 0.02562 * 15 14 13 20 20 C 1.34071 * 110.52222 * 16.81573 * 13 12 11 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.95537 * 262.49446 * 11 9 7 23 23 H 1.09001 * 110.95227 * 26.21350 * 11 9 7 24 24 H 1.08997 * 110.34536 * 215.66483 * 12 11 9 25 25 H 1.09003 * 110.43918 * 93.43833 * 12 11 9 26 26 H 1.08998 * 115.54846 * 154.39394 * 16 15 14 27 27 H 1.09003 * 117.50106 * 359.97438 * 17 16 15 28 28 H 1.08996 * 117.50161 * 145.01590 * 17 16 15 29 29 H 1.08998 * 117.50132 * 214.97188 * 18 16 15 30 30 H 1.09000 * 117.49608 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6252 -2.5785 -0.8837 11 6 2.2354 -3.6873 0.0794 12 6 1.4556 -4.6908 0.9578 13 6 0.5210 -3.8387 1.7870 14 8 -0.2540 -3.8686 2.8913 15 6 -0.8290 -2.6660 3.0188 16 6 -1.7759 -2.2580 4.1178 17 6 -1.9557 -3.2242 5.2903 18 6 -3.0758 -3.0519 4.2613 19 7 -0.4352 -1.9075 2.0369 20 6 0.4061 -2.6133 1.2554 21 1 -0.4850 0.8401 0.0004 22 1 2.4231 -4.1005 -0.9116 23 1 3.1681 -3.3914 0.5598 24 1 2.1401 -5.2410 1.6034 25 1 0.8868 -5.3806 0.3342 26 1 -1.8115 -1.1905 4.3353 27 1 -1.3894 -4.1553 5.2666 28 1 -2.1099 -2.7926 6.2792 29 1 -3.9666 -2.5069 4.5738 30 1 -3.2464 -3.8692 3.5605 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261226893.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:02 Heat of formation + Delta-G solvation = 64.475937 kcal Electronic energy + Delta-G solvation = -14656.485191 eV Core-core repulsion = 12226.957785 eV Total energy + Delta-G solvation = -2429.527406 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.27986 -37.15885 -36.09411 -33.06240 -32.28553 -27.90366 -27.28434 -23.71344 -23.20102 -22.31444 -20.79302 -19.57718 -18.94054 -16.49825 -16.04369 -15.85574 -15.03403 -14.39074 -14.18116 -13.66251 -12.87162 -12.25727 -12.12360 -11.73161 -11.49740 -11.39469 -11.07447 -10.84030 -10.68039 -10.47279 -10.37562 -10.30637 -9.87309 -9.30344 -9.09434 -8.83677 -8.30478 -7.26686 -5.85881 -3.95014 2.41272 3.22019 3.36695 3.44361 3.47137 3.79220 4.23466 4.47823 4.53471 4.94183 5.10161 5.32236 5.42886 5.60849 5.67782 5.78094 5.83599 5.86128 6.05400 6.17649 6.24839 6.44053 6.63516 6.66234 6.83602 6.91618 7.21722 7.60965 7.70179 8.01320 8.36594 9.01955 9.10322 9.69281 11.19791 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.010590 C = 0.008195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.215649 B = 2643.463426 C = 3415.897913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.072 3.928 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.110 3.890 10 H 0.047 0.953 11 C -0.110 4.110 12 C -0.006 4.006 13 C -0.158 4.158 14 O -0.208 6.208 15 C 0.167 3.833 16 C -0.047 4.047 17 C -0.171 4.171 18 C -0.165 4.165 19 N -0.405 5.405 20 C 0.071 3.929 21 H 0.259 0.741 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.139 0.861 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 -7.160 6.277 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.091 3.909 10 H 0.065 0.935 11 C -0.148 4.148 12 C -0.043 4.043 13 C -0.209 4.209 14 O -0.097 6.097 15 C -0.039 4.039 16 C -0.066 4.066 17 C -0.208 4.208 18 C -0.203 4.203 19 N -0.133 5.133 20 C -0.051 4.051 21 H 0.069 0.931 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.842 -6.439 6.207 9.384 hybrid contribution 0.499 0.360 0.322 0.694 sum -2.344 -6.079 6.529 9.224 Atomic orbital electron populations 1.70019 1.05566 1.26124 1.46046 1.24984 0.94767 0.98892 0.94796 0.86634 0.80154 0.84338 0.77422 1.19882 1.21098 1.21157 1.20933 0.92548 0.89676 1.53990 0.92287 1.17921 0.90516 0.93616 0.88878 0.93548 1.22545 0.98885 0.95267 0.98057 1.20490 0.93603 0.96022 0.94206 1.23844 1.03796 1.02302 0.90954 1.83945 1.49061 1.36553 1.40108 1.25212 1.00266 0.79633 0.98778 1.19967 0.95010 0.98574 0.93081 1.23045 1.02461 1.01264 0.94061 1.23069 0.92235 1.02765 1.02223 1.70065 1.10488 1.31277 1.01470 1.23153 0.94770 0.87938 0.99246 0.93150 0.90941 0.91033 0.91752 0.90827 0.84374 0.88247 0.87893 0.87775 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.31 11.70 55.43 0.65 -24.66 16 2 C 0.07 2.08 5.32 -17.82 -0.09 1.98 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.53 -15.05 8.53 -34.44 -0.29 -15.35 16 8 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 9 C 0.11 2.83 2.83 -91.85 -0.26 2.57 16 10 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 11 C -0.11 -2.19 6.63 -25.18 -0.17 -2.35 16 12 C -0.01 -0.10 6.79 -26.84 -0.18 -0.29 16 13 C -0.16 -3.65 8.24 -35.51 -0.29 -3.94 16 14 O -0.21 -4.66 10.48 4.98 0.05 -4.61 16 15 C 0.17 3.76 7.82 -12.98 -0.10 3.66 16 16 C -0.05 -0.80 6.33 -91.77 -0.58 -1.38 16 17 C -0.17 -2.22 10.17 -26.69 -0.27 -2.49 16 18 C -0.16 -2.21 10.24 -26.69 -0.27 -2.48 16 19 N -0.41 -10.91 10.30 -7.18 -0.07 -10.99 16 20 C 0.07 1.88 6.51 -82.46 -0.54 1.34 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 23 H 0.07 1.42 7.79 -51.93 -0.40 1.01 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.14 2.21 8.14 -51.93 -0.42 1.79 16 27 H 0.10 1.35 7.95 -51.93 -0.41 0.93 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 259.56 15.07 3.91 3.91 Total: -1.00 -33.01 259.56 -7.27 -40.28 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -3.73 Total: -2.19 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -3.05 Total: -18.72 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.57 Total: -35.65 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: 0.05 Total: -4.61 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.01 -7.27 -40.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226893.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.756 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds