Wall clock time and date at job start Mon Mar 30 2020 03:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09002 * 110.30763 * 60.72335 * 9 7 2 11 11 C 1.54476 * 110.34064 * 183.00734 * 9 7 2 12 12 C 1.54484 * 101.84561 * 144.35703 * 11 9 7 13 13 C 1.51235 * 104.93221 * 334.52903 * 12 11 9 14 14 O 1.34946 * 142.29132 * 196.82057 * 13 12 11 15 15 C 1.33902 * 107.73524 * 179.97438 * 14 13 12 16 16 C 1.50700 * 125.62084 * 180.02562 * 15 14 13 17 17 C 1.52998 * 117.49742 * 8.73062 * 16 15 14 18 18 C 1.52996 * 117.50152 * 300.06631 * 16 15 14 19 19 N 1.30172 * 108.76379 * 0.02562 * 15 14 13 20 20 C 1.34071 * 110.52222 * 16.81573 * 13 12 11 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.95537 * 262.49446 * 11 9 7 23 23 H 1.09001 * 110.95227 * 26.21350 * 11 9 7 24 24 H 1.08997 * 110.34536 * 215.66483 * 12 11 9 25 25 H 1.09003 * 110.43918 * 93.43833 * 12 11 9 26 26 H 1.08998 * 115.54846 * 154.39394 * 16 15 14 27 27 H 1.09003 * 117.50106 * 359.97438 * 17 16 15 28 28 H 1.08996 * 117.50161 * 145.01590 * 17 16 15 29 29 H 1.08998 * 117.50132 * 214.97188 * 18 16 15 30 30 H 1.09000 * 117.49608 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6252 -2.5785 -0.8837 11 6 2.2354 -3.6873 0.0794 12 6 1.4556 -4.6908 0.9578 13 6 0.5210 -3.8387 1.7870 14 8 -0.2540 -3.8686 2.8913 15 6 -0.8290 -2.6660 3.0188 16 6 -1.7759 -2.2580 4.1178 17 6 -1.9557 -3.2242 5.2903 18 6 -3.0758 -3.0519 4.2613 19 7 -0.4352 -1.9075 2.0369 20 6 0.4061 -2.6133 1.2554 21 1 -0.4850 0.8401 0.0004 22 1 2.4231 -4.1005 -0.9116 23 1 3.1681 -3.3914 0.5598 24 1 2.1401 -5.2410 1.6034 25 1 0.8868 -5.3806 0.3342 26 1 -1.8115 -1.1905 4.3353 27 1 -1.3894 -4.1553 5.2666 28 1 -2.1099 -2.7926 6.2792 29 1 -3.9666 -2.5069 4.5738 30 1 -3.2464 -3.8692 3.5605 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261226893.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:02 Heat of formation + Delta-G solvation = 42.002321 kcal Electronic energy + Delta-G solvation = -14657.459720 eV Core-core repulsion = 12226.957785 eV Total energy + Delta-G solvation = -2430.501935 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.04529 -38.56567 -37.61818 -34.85141 -34.39587 -29.81338 -28.93704 -25.67786 -24.75546 -23.35421 -22.41964 -21.35548 -20.62133 -18.55704 -17.64765 -17.41473 -16.75461 -16.25829 -15.53286 -15.31398 -14.64425 -14.00494 -13.72814 -13.45780 -13.11888 -12.87259 -12.67029 -12.46019 -12.39000 -12.15831 -11.95789 -11.75205 -11.50658 -11.15552 -10.97478 -10.71911 -10.47169 -9.02112 -8.02560 -6.17734 0.71548 1.37623 1.39273 1.50210 1.58537 2.11458 2.45221 2.88237 3.05825 3.28597 3.72427 3.96197 3.99201 4.09260 4.29977 4.34425 4.49337 4.69857 4.82047 4.85156 4.89543 5.02083 5.08650 5.18385 5.21532 5.27211 5.48575 5.60157 5.77827 5.92798 6.26613 6.88181 7.29877 7.49501 9.02282 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.010590 C = 0.008195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.215649 B = 2643.463426 C = 3415.897913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.096 3.904 10 H 0.013 0.987 11 C -0.098 4.098 12 C 0.003 3.997 13 C -0.151 4.151 14 O -0.205 6.205 15 C 0.175 3.825 16 C -0.092 4.092 17 C -0.140 4.140 18 C -0.147 4.147 19 N -0.467 5.467 20 C 0.015 3.985 21 H 0.254 0.746 22 H 0.103 0.897 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.140 0.860 27 H 0.095 0.905 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 -8.454 7.653 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.077 3.923 10 H 0.031 0.969 11 C -0.136 4.136 12 C -0.034 4.034 13 C -0.203 4.203 14 O -0.094 6.094 15 C -0.032 4.032 16 C -0.111 4.111 17 C -0.178 4.178 18 C -0.184 4.184 19 N -0.194 5.194 20 C -0.106 4.106 21 H 0.063 0.937 22 H 0.121 0.879 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.158 0.842 27 H 0.113 0.887 28 H 0.157 0.843 29 H 0.154 0.846 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.505 -7.744 7.568 11.113 hybrid contribution 0.344 0.746 -0.082 0.826 sum -2.161 -6.998 7.486 10.473 Atomic orbital electron populations 1.70191 1.07049 1.26388 1.47518 1.25793 0.95571 1.02387 0.94725 0.85642 0.79375 0.80201 0.77208 1.18681 1.20273 1.21727 1.21355 0.92822 0.91223 1.53231 0.92156 1.18001 0.91258 0.95229 0.87849 0.96869 1.22489 0.97449 0.93363 1.00297 1.20686 0.93354 0.95388 0.94021 1.24674 1.03103 1.02173 0.90345 1.83970 1.49000 1.36593 1.39859 1.26254 0.99391 0.78928 0.98578 1.20290 0.96853 0.99698 0.94233 1.23197 1.00704 0.99453 0.94401 1.23212 0.92137 1.01416 1.01678 1.69951 1.12493 1.33497 1.03505 1.23295 0.96864 0.89962 1.00472 0.93709 0.87886 0.91003 0.88195 0.87941 0.84247 0.88692 0.84330 0.84619 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.82 11.70 21.45 0.25 -54.56 16 2 C 0.02 1.08 5.32 84.66 0.45 1.53 16 3 Si 0.95 46.27 29.54 68.60 2.03 48.29 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 7 C -0.55 -31.68 8.53 25.60 0.22 -31.46 16 8 H 0.06 3.35 7.62 -2.92 -0.02 3.32 16 9 C 0.10 5.05 2.83 -11.59 -0.03 5.02 16 10 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 11 C -0.10 -3.78 6.63 31.60 0.21 -3.57 16 12 C 0.00 0.09 6.79 30.52 0.21 0.30 16 13 C -0.15 -6.91 8.24 24.91 0.21 -6.71 16 14 O -0.21 -9.11 10.48 -5.10 -0.05 -9.16 16 15 C 0.17 7.96 7.82 88.35 0.69 8.65 16 16 C -0.09 -3.02 6.33 -11.54 -0.07 -3.09 16 17 C -0.14 -3.21 10.17 30.62 0.31 -2.90 16 18 C -0.15 -3.56 10.24 30.62 0.31 -3.24 16 19 N -0.47 -26.05 10.30 -291.51 -3.00 -29.05 16 20 C 0.01 0.80 6.51 41.35 0.27 1.07 16 21 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 22 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 23 H 0.07 2.73 7.79 -2.39 -0.02 2.71 16 24 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 26 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 27 H 0.09 2.30 7.95 -2.39 -0.02 2.28 16 28 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -75.52 259.56 3.13 -72.40 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.13 Total: 6.49 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 2.77 Total: -34.40 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -2.75 Total: -83.62 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.05 Total: -9.16 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -75.52 3.13 -72.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226893.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.400 kcal (2) G-P(sol) polarization free energy of solvation -75.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds