Wall clock time and date at job start Mon Mar 30 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09004 * 110.29958 * 300.70296 * 9 7 2 11 11 C 1.54468 * 110.34490 * 178.52974 * 9 7 2 12 12 C 1.54482 * 101.84640 * 215.64988 * 11 9 7 13 13 C 1.51233 * 104.93410 * 25.46156 * 12 11 9 14 14 O 1.34954 * 142.28837 * 163.21429 * 13 12 11 15 15 C 1.33914 * 107.72851 * 179.97438 * 14 13 12 16 16 C 1.50701 * 125.61562 * 179.97438 * 15 14 13 17 17 C 1.53004 * 117.49824 * 8.77670 * 16 15 14 18 18 C 1.52996 * 117.49832 * 300.11838 * 16 15 14 19 19 N 1.30169 * 108.76424 * 359.97438 * 15 14 13 20 20 C 1.34253 * 110.55324 * 343.10198 * 13 12 11 21 21 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 22 22 H 1.09005 * 110.95206 * 333.78067 * 11 9 7 23 23 H 1.09000 * 110.95621 * 97.46954 * 11 9 7 24 24 H 1.09001 * 110.35161 * 144.33190 * 12 11 9 25 25 H 1.09006 * 110.34652 * 266.60056 * 12 11 9 26 26 H 1.08994 * 115.54720 * 154.44100 * 16 15 14 27 27 H 1.08998 * 117.49889 * 359.97438 * 17 16 15 28 28 H 1.08998 * 117.49756 * 145.01775 * 17 16 15 29 29 H 1.08999 * 117.49697 * 214.97855 * 18 16 15 30 30 H 1.08998 * 117.50161 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.6136 -2.5679 0.8757 11 6 2.2362 -3.6881 -0.0500 12 6 1.4695 -4.7029 -0.9269 13 6 0.5473 -3.8617 -1.7807 14 8 -0.2117 -3.9061 -2.8957 15 6 -0.7852 -2.7054 -3.0467 16 6 -1.7163 -2.3119 -4.1644 17 6 -2.2017 -3.4190 -5.1023 18 6 -1.1777 -2.3930 -5.5941 19 7 -0.4060 -1.9343 -2.0689 20 6 0.4225 -2.6282 -1.2655 21 1 -0.4849 0.8401 0.0041 22 1 3.1759 -3.3984 -0.5204 23 1 2.4096 -4.0881 0.9490 24 1 2.1633 -5.2614 -1.5551 25 1 0.8913 -5.3833 -0.3016 26 1 -2.4131 -1.5061 -3.9340 27 1 -1.8473 -4.4318 -4.9112 28 1 -3.2177 -3.3412 -5.4893 29 1 -1.5204 -1.6407 -6.3044 30 1 -0.1498 -2.7306 -5.7263 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261226896.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:05 Heat of formation + Delta-G solvation = 41.414543 kcal Electronic energy + Delta-G solvation = -14657.181524 eV Core-core repulsion = 12226.654100 eV Total energy + Delta-G solvation = -2430.527423 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.04478 -38.56270 -37.61850 -34.86565 -34.39833 -29.81030 -28.93903 -25.67709 -24.76111 -23.35663 -22.41758 -21.35358 -20.63043 -18.55761 -17.79361 -17.16424 -16.82136 -16.35578 -15.48643 -15.31816 -14.62362 -14.01902 -13.72445 -13.48528 -13.12053 -12.83879 -12.61785 -12.46292 -12.43629 -12.20154 -11.96932 -11.74217 -11.50946 -11.15349 -11.00568 -10.72261 -10.45756 -9.01770 -8.02756 -6.18007 0.70590 1.38319 1.41220 1.47760 1.58582 2.10645 2.45426 2.86335 3.07432 3.28024 3.72333 3.95699 3.99262 4.08884 4.29877 4.34225 4.48934 4.69665 4.81827 4.84976 4.89499 5.01774 5.08572 5.18194 5.21227 5.27115 5.48379 5.59681 5.77658 5.92368 6.26430 6.87695 7.29406 7.49304 9.02052 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027003 B = 0.010769 C = 0.008283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.665107 B = 2599.416750 C = 3379.515007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.019 3.981 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.096 3.904 10 H 0.014 0.986 11 C -0.098 4.098 12 C 0.003 3.997 13 C -0.152 4.152 14 O -0.205 6.205 15 C 0.175 3.825 16 C -0.091 4.091 17 C -0.139 4.139 18 C -0.150 4.150 19 N -0.469 5.469 20 C 0.015 3.985 21 H 0.254 0.746 22 H 0.071 0.929 23 H 0.103 0.897 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.142 0.858 27 H 0.095 0.905 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 -8.246 -8.107 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.077 3.923 10 H 0.032 0.968 11 C -0.136 4.136 12 C -0.034 4.034 13 C -0.204 4.204 14 O -0.094 6.094 15 C -0.031 4.031 16 C -0.110 4.110 17 C -0.176 4.176 18 C -0.187 4.187 19 N -0.197 5.197 20 C -0.106 4.106 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.121 0.879 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.159 0.841 27 H 0.113 0.887 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.732 -7.534 -8.033 11.149 hybrid contribution 0.331 0.714 0.114 0.796 sum -1.400 -6.819 -7.919 10.544 Atomic orbital electron populations 1.70174 1.07088 1.26569 1.47484 1.25790 0.95566 1.02392 0.94654 0.85749 0.78419 0.79497 0.78714 1.20470 1.21349 1.18737 1.21305 0.92813 0.91259 1.53401 0.92173 1.17987 0.91391 0.95180 0.87700 0.96829 1.22491 0.97516 0.93258 1.00342 1.20686 0.93673 0.95529 0.93554 1.24739 1.03556 1.02075 0.90003 1.83974 1.49714 1.36497 1.39182 1.26248 0.99363 0.78729 0.98733 1.20304 0.99790 1.05017 0.85903 1.23195 1.01312 0.94200 0.98880 1.23216 0.99642 1.02989 0.92888 1.69854 1.12901 1.33451 1.03445 1.23326 0.96895 0.90024 1.00351 0.93672 0.91010 0.87880 0.88186 0.87922 0.84068 0.88685 0.84238 0.84636 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.94 11.85 21.45 0.25 -54.68 16 2 C 0.02 1.12 5.33 84.66 0.45 1.57 16 3 Si 0.95 46.24 29.54 68.60 2.03 48.27 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.55 -31.78 8.52 25.60 0.22 -31.56 16 8 H 0.06 3.32 7.61 -2.91 -0.02 3.30 16 9 C 0.10 5.10 2.80 -11.59 -0.03 5.07 16 10 H 0.01 0.80 8.14 -2.38 -0.02 0.78 16 11 C -0.10 -3.78 6.63 31.60 0.21 -3.57 16 12 C 0.00 0.09 6.79 30.52 0.21 0.30 16 13 C -0.15 -6.95 8.25 24.94 0.21 -6.74 16 14 O -0.20 -9.08 10.48 -5.29 -0.06 -9.14 16 15 C 0.18 7.98 7.82 88.36 0.69 8.67 16 16 C -0.09 -2.99 6.33 -11.54 -0.07 -3.06 16 17 C -0.14 -3.15 10.17 30.62 0.31 -2.84 16 18 C -0.15 -3.66 10.24 30.62 0.31 -3.35 16 19 N -0.47 -26.13 10.42 -291.46 -3.04 -29.17 16 20 C 0.01 0.81 6.55 41.41 0.27 1.08 16 21 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 22 H 0.07 2.73 7.78 -2.38 -0.02 2.71 16 23 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 24 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 26 H 0.14 4.45 8.14 -2.39 -0.02 4.44 16 27 H 0.09 2.28 7.95 -2.39 -0.02 2.26 16 28 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -75.50 259.83 3.10 -72.40 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 1.14 Total: 6.75 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 2.77 Total: -34.43 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -2.78 Total: -83.86 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.06 Total: -9.14 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -75.50 3.10 -72.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226896.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.816 kcal (2) G-P(sol) polarization free energy of solvation -75.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds