Wall clock time and date at job start Mon Mar 30 2020 02:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99958 * 2 1 4 4 H 1.48506 * 109.47494 * 240.00261 * 3 2 1 5 5 H 1.48499 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47141 * 120.00706 * 3 2 1 7 7 C 1.37878 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00171 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47029 * 300.00254 * 9 7 2 11 11 N 1.46900 * 109.47192 * 60.00148 * 9 7 2 12 12 C 1.50701 * 109.47488 * 180.02562 * 9 7 2 13 13 C 1.38254 * 119.98074 * 280.00132 * 12 9 7 14 14 C 1.38295 * 120.04541 * 179.97438 * 13 12 9 15 15 C 1.37969 * 119.91539 * 0.23849 * 14 13 12 16 16 C 1.38598 * 120.03777 * 359.48534 * 15 14 13 17 17 C 1.37963 * 120.04005 * 0.53052 * 16 15 14 18 18 C 1.51083 * 107.26979 * 180.28774 * 16 15 14 19 19 O 1.43938 * 105.95748 * 17.93554 * 18 16 15 20 20 C 1.43939 * 104.95118 * 331.55261 * 19 18 16 21 21 H 0.96998 * 120.00412 * 359.97438 * 1 2 3 22 22 H 1.00894 * 111.00047 * 59.99806 * 11 9 7 23 23 H 1.00899 * 111.00108 * 183.96073 * 11 9 7 24 24 H 1.08002 * 119.97814 * 359.97438 * 13 12 9 25 25 H 1.08002 * 120.04016 * 179.97438 * 14 13 12 26 26 H 1.08001 * 120.04128 * 179.70335 * 17 16 15 27 27 H 1.09002 * 110.15301 * 137.05512 * 18 16 15 28 28 H 1.08994 * 110.15682 * 258.73566 * 18 16 15 29 29 H 1.08998 * 110.15555 * 147.56306 * 20 19 18 30 30 H 1.09003 * 110.15620 * 269.25751 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 0.4061 -2.5768 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 6 2.8373 -4.0346 -1.1799 14 6 3.7366 -5.0853 -1.1813 15 6 4.0235 -5.7470 -0.0052 16 6 3.4193 -5.3524 1.1781 17 6 2.5220 -4.3044 1.1794 18 6 3.9395 -6.2569 2.2707 19 8 5.1377 -6.8596 1.7485 20 6 4.9418 -6.9010 0.3231 21 1 -0.4850 0.8400 0.0004 22 1 0.9637 -2.5251 -2.0389 23 1 -0.1579 -3.4134 -1.1911 24 1 2.6091 -3.5184 -2.1007 25 1 4.2104 -5.3901 -2.1027 26 1 2.0476 -4.0000 2.1006 27 1 4.1702 -5.6742 3.1626 28 1 3.2026 -7.0252 2.5049 29 1 5.8958 -6.7831 -0.1907 30 1 4.4745 -7.8428 0.0354 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261267586.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:48 Heat of formation + Delta-G solvation = -11.925473 kcal Electronic energy + Delta-G solvation = -14319.271923 eV Core-core repulsion = 11886.431503 eV Total energy + Delta-G solvation = -2432.840420 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.31044 -37.48287 -34.34342 -31.72409 -31.16134 -29.82542 -27.72909 -25.94235 -24.18483 -22.33792 -21.31229 -19.61471 -16.54255 -16.29822 -16.06027 -15.68681 -15.04293 -14.50948 -13.98482 -13.81633 -13.46944 -12.84986 -12.61438 -12.34426 -12.24183 -11.76477 -11.25735 -11.22371 -10.84061 -10.65545 -10.42513 -9.96559 -9.77198 -9.26148 -8.47220 -8.36927 -7.90452 -7.13247 -5.91598 -4.07115 1.72995 1.83550 3.33240 3.37965 3.40829 4.05545 4.15542 4.47357 4.54427 4.90708 5.26296 5.33356 5.44834 5.49825 5.53060 5.67741 5.76833 5.97908 6.08517 6.25185 6.34903 6.49169 6.58422 6.89047 6.97008 7.00810 7.46404 7.51280 7.86584 8.13290 8.57533 8.94988 9.09708 9.61852 11.12680 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.043008 B = 0.007267 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.884401 B = 3852.303026 C = 4001.590214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.085 3.915 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.254 3.746 10 H 0.048 0.952 11 N -0.809 5.809 12 C -0.063 4.063 13 C -0.118 4.118 14 C -0.094 4.094 15 C -0.165 4.165 16 C -0.137 4.137 17 C -0.095 4.095 18 C 0.094 3.906 19 O -0.368 6.368 20 C 0.098 3.902 21 H 0.257 0.743 22 H 0.318 0.682 23 H 0.299 0.701 24 H 0.123 0.877 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -11.014 -0.004 12.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.713 3.287 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.572 4.572 8 H 0.071 0.929 9 C 0.144 3.856 10 H 0.066 0.934 11 N -0.334 5.334 12 C -0.066 4.066 13 C -0.137 4.137 14 C -0.112 4.112 15 C -0.166 4.166 16 C -0.137 4.137 17 C -0.113 4.113 18 C 0.017 3.983 19 O -0.287 6.287 20 C 0.021 3.979 21 H 0.067 0.933 22 H 0.130 0.870 23 H 0.109 0.891 24 H 0.141 0.859 25 H 0.133 0.867 26 H 0.139 0.861 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.188 -10.281 0.386 11.522 hybrid contribution 0.899 0.173 -0.390 0.995 sum 6.087 -10.108 -0.004 11.799 Atomic orbital electron populations 1.70086 1.05686 1.25936 1.46405 1.24941 0.94655 0.98562 0.94095 0.86798 0.79734 0.83551 0.78608 1.20311 1.21262 1.20328 1.20775 0.92198 0.89364 1.54814 0.92870 1.18228 0.87485 0.88771 0.91132 0.93438 1.59205 1.27980 1.41992 1.04272 1.21836 0.96996 0.96048 0.91684 1.20978 0.97088 0.96675 0.98911 1.20274 0.98722 0.96088 0.96157 1.20775 1.01583 0.99355 0.94838 1.20937 0.99295 0.97921 0.95546 1.20368 0.97823 0.94316 0.98821 1.21686 0.86713 0.94176 0.95684 1.89015 1.38353 1.82127 1.19184 1.21608 0.98646 0.95522 0.82078 0.93299 0.86953 0.89123 0.85878 0.86726 0.86123 0.88860 0.91072 0.89249 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.33 12.77 55.43 0.71 -23.62 16 2 C 0.08 2.33 5.39 -17.82 -0.10 2.23 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -14.43 8.70 -34.44 -0.30 -14.73 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.25 6.12 2.85 -70.02 -0.20 5.92 16 10 H 0.05 1.26 8.00 -51.93 -0.42 0.84 16 11 N -0.81 -18.44 8.36 -6.65 -0.06 -18.50 16 12 C -0.06 -1.30 4.89 -104.59 -0.51 -1.81 16 13 C -0.12 -2.19 9.29 -39.55 -0.37 -2.56 16 14 C -0.09 -1.54 10.04 -39.66 -0.40 -1.93 16 15 C -0.17 -2.68 6.32 -104.40 -0.66 -3.34 16 16 C -0.14 -2.33 6.32 -104.40 -0.66 -2.99 16 17 C -0.09 -1.80 9.66 -39.66 -0.38 -2.18 16 18 C 0.09 1.33 7.63 36.19 0.28 1.61 16 19 O -0.37 -5.57 11.72 -35.23 -0.41 -5.98 16 20 C 0.10 1.32 7.63 36.19 0.28 1.60 16 21 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 22 H 0.32 6.86 7.34 -39.29 -0.29 6.57 16 23 H 0.30 6.08 9.06 -39.29 -0.36 5.72 16 24 H 0.12 2.20 6.66 -52.49 -0.35 1.85 16 25 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 26 H 0.12 2.18 8.04 -52.49 -0.42 1.76 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 258.22 15.07 3.89 3.89 Total: -1.00 -29.72 258.22 -7.40 -37.12 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -3.49 Total: 9.09 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -3.02 Total: -18.18 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.65 Total: -42.12 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.41 Total: -5.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.72 -7.40 -37.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267586.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.196 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds