Wall clock time and date at job start Mon Mar 30 2020 02:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99958 * 2 1 4 4 H 1.48506 * 109.47494 * 240.00261 * 3 2 1 5 5 H 1.48499 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47141 * 120.00706 * 3 2 1 7 7 C 1.37878 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00171 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47029 * 300.00254 * 9 7 2 11 11 N 1.46900 * 109.47192 * 60.00148 * 9 7 2 12 12 C 1.50701 * 109.47488 * 180.02562 * 9 7 2 13 13 C 1.38254 * 119.98074 * 280.00132 * 12 9 7 14 14 C 1.38295 * 120.04541 * 179.97438 * 13 12 9 15 15 C 1.37969 * 119.91539 * 0.23849 * 14 13 12 16 16 C 1.38598 * 120.03777 * 359.48534 * 15 14 13 17 17 C 1.37963 * 120.04005 * 0.53052 * 16 15 14 18 18 C 1.51083 * 107.26979 * 180.28774 * 16 15 14 19 19 O 1.43938 * 105.95748 * 17.93554 * 18 16 15 20 20 C 1.43939 * 104.95118 * 331.55261 * 19 18 16 21 21 H 0.96998 * 120.00412 * 359.97438 * 1 2 3 22 22 H 1.00894 * 111.00047 * 59.99806 * 11 9 7 23 23 H 1.00899 * 111.00108 * 183.96073 * 11 9 7 24 24 H 1.08002 * 119.97814 * 359.97438 * 13 12 9 25 25 H 1.08002 * 120.04016 * 179.97438 * 14 13 12 26 26 H 1.08001 * 120.04128 * 179.70335 * 17 16 15 27 27 H 1.09002 * 110.15301 * 137.05512 * 18 16 15 28 28 H 1.08994 * 110.15682 * 258.73566 * 18 16 15 29 29 H 1.08998 * 110.15555 * 147.56306 * 20 19 18 30 30 H 1.09003 * 110.15620 * 269.25751 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 0.4061 -2.5768 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 6 2.8373 -4.0346 -1.1799 14 6 3.7366 -5.0853 -1.1813 15 6 4.0235 -5.7470 -0.0052 16 6 3.4193 -5.3524 1.1781 17 6 2.5220 -4.3044 1.1794 18 6 3.9395 -6.2569 2.2707 19 8 5.1377 -6.8596 1.7485 20 6 4.9418 -6.9010 0.3231 21 1 -0.4850 0.8400 0.0004 22 1 0.9637 -2.5251 -2.0389 23 1 -0.1579 -3.4134 -1.1911 24 1 2.6091 -3.5184 -2.1007 25 1 4.2104 -5.3901 -2.1027 26 1 2.0476 -4.0000 2.1006 27 1 4.1702 -5.6742 3.1626 28 1 3.2026 -7.0252 2.5049 29 1 5.8958 -6.7831 -0.1907 30 1 4.4745 -7.8428 0.0354 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267586.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:48 Heat of formation + Delta-G solvation = -32.269475 kcal Electronic energy + Delta-G solvation = -14320.154105 eV Core-core repulsion = 11886.431503 eV Total energy + Delta-G solvation = -2433.722602 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.56191 -38.86616 -36.06526 -33.66976 -32.47168 -31.30895 -29.01557 -27.84525 -25.56227 -23.98567 -22.57143 -21.17211 -18.52303 -17.55236 -17.26098 -17.05809 -16.60316 -16.34846 -15.60602 -15.18228 -14.92289 -14.35841 -14.10777 -13.81339 -13.44555 -13.30113 -12.96018 -12.86209 -12.72314 -12.34104 -11.94400 -11.59253 -11.37177 -10.91594 -10.57241 -9.74555 -9.36437 -8.89163 -8.00881 -6.22942 0.34981 0.45376 1.42596 1.42738 1.50638 2.43564 2.79150 2.96877 3.22286 3.30645 3.72472 4.03953 4.22884 4.41158 4.43068 4.44305 4.49576 4.62447 4.63585 4.79594 4.95765 5.10335 5.31241 5.34137 5.45696 5.71276 5.73851 5.86571 6.03443 6.17016 6.62240 7.07478 7.23915 7.49710 9.02309 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.043008 B = 0.007267 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.884401 B = 3852.303026 C = 4001.590214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.037 3.963 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.043 0.957 9 C 0.259 3.741 10 H 0.012 0.988 11 N -0.818 5.818 12 C -0.089 4.089 13 C -0.127 4.127 14 C -0.089 4.089 15 C -0.164 4.164 16 C -0.144 4.144 17 C -0.111 4.111 18 C 0.095 3.905 19 O -0.380 6.380 20 C 0.098 3.902 21 H 0.257 0.743 22 H 0.325 0.675 23 H 0.312 0.688 24 H 0.124 0.876 25 H 0.150 0.850 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.248 -12.327 -0.469 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.167 4.167 3 Si 0.772 3.228 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.061 0.939 9 C 0.149 3.851 10 H 0.030 0.970 11 N -0.346 5.346 12 C -0.091 4.091 13 C -0.145 4.145 14 C -0.107 4.107 15 C -0.164 4.164 16 C -0.144 4.144 17 C -0.130 4.130 18 C 0.019 3.981 19 O -0.299 6.299 20 C 0.022 3.978 21 H 0.066 0.934 22 H 0.138 0.862 23 H 0.123 0.877 24 H 0.142 0.858 25 H 0.168 0.832 26 H 0.134 0.866 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.909 -11.606 -0.080 13.507 hybrid contribution 0.400 0.477 -0.238 0.666 sum 7.308 -11.129 -0.318 13.318 Atomic orbital electron populations 1.70206 1.06997 1.26576 1.47691 1.25656 0.95425 1.01722 0.93887 0.85826 0.78541 0.79752 0.78638 1.19796 1.20808 1.20026 1.21068 0.91923 0.91088 1.54281 0.93869 1.17846 0.87672 0.89424 0.90110 0.97035 1.59000 1.28371 1.43064 1.04130 1.21455 0.98002 0.96222 0.93451 1.21044 0.97742 0.97688 0.98052 1.20575 0.97571 0.94764 0.97802 1.21268 1.01123 0.99673 0.94339 1.21238 0.98392 0.97350 0.97432 1.20369 0.98996 0.95472 0.98191 1.21802 0.86984 0.94333 0.94955 1.89011 1.38642 1.82125 1.20075 1.21829 0.99297 0.95216 0.81433 0.93424 0.86237 0.87701 0.85795 0.83207 0.86641 0.87900 0.88846 0.87072 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.57 12.77 21.45 0.27 -51.29 16 2 C 0.04 2.07 5.39 84.66 0.46 2.52 16 3 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.55 -30.20 8.70 25.60 0.22 -29.98 16 8 H 0.04 2.42 7.74 -2.91 -0.02 2.39 16 9 C 0.26 12.96 2.85 43.42 0.12 13.08 16 10 H 0.01 0.66 8.00 -2.39 -0.02 0.64 16 11 N -0.82 -38.20 8.36 -174.96 -1.46 -39.66 16 12 C -0.09 -3.73 4.89 -19.85 -0.10 -3.82 16 13 C -0.13 -4.62 9.29 22.29 0.21 -4.41 16 14 C -0.09 -2.67 10.04 22.22 0.22 -2.45 16 15 C -0.16 -4.83 6.32 -19.72 -0.12 -4.95 16 16 C -0.14 -4.66 6.32 -19.72 -0.12 -4.78 16 17 C -0.11 -4.28 9.66 22.22 0.21 -4.06 16 18 C 0.10 2.46 7.63 71.36 0.54 3.01 16 19 O -0.38 -10.18 11.72 -148.98 -1.75 -11.93 16 20 C 0.10 2.25 7.63 71.36 0.54 2.79 16 21 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 22 H 0.32 14.22 7.34 -89.70 -0.66 13.56 16 23 H 0.31 12.98 9.06 -89.69 -0.81 12.17 16 24 H 0.12 4.38 6.66 -2.91 -0.02 4.36 16 25 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 26 H 0.12 4.37 8.04 -2.91 -0.02 4.35 16 27 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -63.83 258.22 0.97 -62.86 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.31 Total: 27.09 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 2.19 Total: -33.05 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -1.19 Total: -90.96 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.75 Total: -11.93 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -63.83 0.97 -62.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267586.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.590 kcal (2) G-P(sol) polarization free energy of solvation -63.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds