Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00197 * 2 1 4 4 H 1.48501 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46993 * 300.00351 * 3 2 1 6 6 H 1.48497 * 109.46994 * 60.00361 * 3 2 1 7 7 C 1.37879 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00423 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99881 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47025 * 59.99954 * 9 7 2 11 11 N 1.46900 * 109.47110 * 300.00244 * 9 7 2 12 12 C 1.50700 * 109.47439 * 180.02562 * 9 7 2 13 13 C 1.38254 * 119.97774 * 80.02132 * 12 9 7 14 14 C 1.38297 * 120.04001 * 180.02562 * 13 12 9 15 15 C 1.37963 * 119.91930 * 359.97438 * 14 13 12 16 16 C 1.38598 * 120.04005 * 359.73196 * 15 14 13 17 17 C 1.37969 * 120.03777 * 0.53052 * 16 15 14 18 18 C 1.51087 * 107.27287 * 179.86979 * 16 15 14 19 19 O 1.43939 * 106.01936 * 342.68485 * 18 16 15 20 20 C 1.43938 * 104.95118 * 28.23190 * 19 18 16 21 21 H 0.97004 * 119.99968 * 359.97438 * 1 2 3 22 22 H 1.00894 * 111.00577 * 176.04323 * 11 9 7 23 23 H 1.00904 * 110.99723 * 299.99930 * 11 9 7 24 24 H 1.08002 * 119.97835 * 0.02562 * 13 12 9 25 25 H 1.08001 * 120.03942 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.04384 * 179.77074 * 17 16 15 27 27 H 1.08998 * 110.29861 * 223.44768 * 18 16 15 28 28 H 1.09003 * 109.99886 * 101.76288 * 18 16 15 29 29 H 1.09002 * 110.15233 * 212.43258 * 20 19 18 30 30 H 1.08994 * 110.21806 * 90.71216 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4069 -2.5773 1.1992 12 6 2.2303 -3.6447 -0.0005 13 6 2.8369 -4.0349 1.1789 14 6 3.7362 -5.0856 1.1803 15 6 4.0268 -5.7442 0.0034 16 6 3.4141 -5.3569 -1.1779 17 6 2.5210 -4.3052 -1.1802 18 6 3.9381 -6.2582 -2.2715 19 8 5.1362 -6.8611 -1.7493 20 6 4.9404 -6.9021 -0.3239 21 1 -0.4850 0.8401 0.0004 22 1 -0.1571 -3.4138 1.1908 23 1 0.9653 -2.5260 2.0381 24 1 2.6084 -3.5189 2.0998 25 1 4.2098 -5.3907 2.1018 26 1 2.0463 -4.0010 -2.1014 27 1 4.1688 -5.6757 -3.1634 28 1 3.2018 -7.0272 -2.5056 29 1 5.8946 -6.7845 0.1898 30 1 4.4724 -7.8431 -0.0349 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261267588.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = -11.972372 kcal Electronic energy + Delta-G solvation = -14319.544000 eV Core-core repulsion = 11886.701546 eV Total energy + Delta-G solvation = -2432.842454 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31068 -37.48383 -34.34501 -31.72590 -31.16144 -29.82534 -27.72949 -25.94497 -24.18545 -22.34014 -21.31264 -19.61592 -16.54586 -16.30025 -16.05975 -15.68850 -15.04423 -14.51113 -13.98352 -13.81139 -13.47155 -12.85064 -12.61793 -12.34334 -12.25036 -11.76634 -11.25136 -11.23095 -10.87768 -10.61337 -10.42698 -9.96037 -9.77778 -9.24108 -8.48282 -8.36934 -7.90421 -7.13383 -5.92077 -4.07349 1.72948 1.83567 3.30517 3.38954 3.43030 4.05528 4.15513 4.47253 4.54390 4.90693 5.26271 5.33110 5.44876 5.49784 5.53017 5.67685 5.76722 5.97820 6.08453 6.25072 6.34832 6.49186 6.58357 6.88993 6.96936 7.00736 7.46376 7.51162 7.86870 8.12970 8.57458 8.94901 9.09803 9.61750 11.12251 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.043021 B = 0.007265 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.693888 B = 3852.927519 C = 4001.724163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.253 3.747 10 H 0.048 0.952 11 N -0.809 5.809 12 C -0.063 4.063 13 C -0.118 4.118 14 C -0.094 4.094 15 C -0.165 4.165 16 C -0.137 4.137 17 C -0.094 4.094 18 C 0.094 3.906 19 O -0.368 6.368 20 C 0.098 3.902 21 H 0.256 0.744 22 H 0.299 0.701 23 H 0.318 0.682 24 H 0.123 0.877 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.563 -11.037 0.007 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.143 3.857 10 H 0.066 0.934 11 N -0.334 5.334 12 C -0.066 4.066 13 C -0.136 4.136 14 C -0.113 4.113 15 C -0.165 4.165 16 C -0.137 4.137 17 C -0.113 4.113 18 C 0.017 3.983 19 O -0.287 6.287 20 C 0.021 3.979 21 H 0.066 0.934 22 H 0.109 0.891 23 H 0.130 0.870 24 H 0.141 0.859 25 H 0.133 0.867 26 H 0.139 0.861 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.222 -10.308 -0.384 11.561 hybrid contribution 0.870 0.180 0.389 0.970 sum 6.092 -10.128 0.005 11.819 Atomic orbital electron populations 1.70111 1.05691 1.25699 1.46616 1.24948 0.94653 0.98593 0.94108 0.86682 0.80294 0.84232 0.77582 1.19858 1.21016 1.20972 1.20856 0.92273 0.89332 1.54539 0.92755 1.18246 0.87501 0.88816 0.91131 0.93424 1.59205 1.27978 1.42001 1.04265 1.21834 0.96973 0.96076 0.91684 1.20977 0.97109 0.96647 0.98909 1.20272 0.98691 0.96166 0.96121 1.20774 1.01483 0.99408 0.94865 1.20938 0.99254 0.97945 0.95585 1.20368 0.97952 0.94178 0.98820 1.21685 0.86676 0.94234 0.95656 1.89015 1.38374 1.82103 1.19187 1.21608 0.98715 0.95460 0.82077 0.93421 0.89118 0.86954 0.85874 0.86726 0.86122 0.88835 0.91113 0.89271 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.33 12.77 55.43 0.71 -23.62 16 2 C 0.08 2.31 5.39 -17.82 -0.10 2.22 16 3 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.38 8.70 -34.44 -0.30 -14.68 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.25 6.10 2.85 -70.01 -0.20 5.90 16 10 H 0.05 1.26 8.01 -51.93 -0.42 0.84 16 11 N -0.81 -18.43 8.36 -6.65 -0.06 -18.49 16 12 C -0.06 -1.30 4.89 -104.59 -0.51 -1.81 16 13 C -0.12 -2.19 9.29 -39.55 -0.37 -2.56 16 14 C -0.09 -1.54 10.04 -39.66 -0.40 -1.94 16 15 C -0.16 -2.68 6.32 -104.40 -0.66 -3.34 16 16 C -0.14 -2.33 6.32 -104.40 -0.66 -2.99 16 17 C -0.09 -1.79 9.67 -39.66 -0.38 -2.18 16 18 C 0.09 1.33 7.63 36.19 0.28 1.61 16 19 O -0.37 -5.57 11.72 -35.23 -0.41 -5.98 16 20 C 0.10 1.32 7.63 36.19 0.28 1.60 16 21 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 22 H 0.30 6.08 9.06 -39.29 -0.36 5.72 16 23 H 0.32 6.85 7.33 -39.29 -0.29 6.57 16 24 H 0.12 2.20 6.66 -52.49 -0.35 1.85 16 25 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 26 H 0.12 2.18 8.04 -52.49 -0.42 1.76 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 258.22 15.07 3.89 3.89 Total: -1.00 -29.80 258.22 -7.40 -37.20 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -3.49 Total: 9.02 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -3.02 Total: -18.17 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.65 Total: -42.11 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.41 Total: -5.98 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.80 -7.40 -37.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267588.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.223 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds