Wall clock time and date at job start Mon Mar 30 2020 02:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99924 * 2 1 4 4 H 1.48502 * 109.46848 * 239.99856 * 3 2 1 5 5 H 1.48507 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47167 * 119.99709 * 3 2 1 7 7 C 1.37875 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00160 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47034 * 299.99659 * 9 7 2 11 11 N 1.46898 * 109.47099 * 59.99747 * 9 7 2 12 12 C 1.50700 * 109.46998 * 180.02562 * 9 7 2 13 13 C 1.38337 * 120.03593 * 264.97568 * 12 9 7 14 14 C 1.38224 * 120.03918 * 179.97438 * 13 12 9 15 15 C 1.38345 * 120.03997 * 0.02562 * 14 13 12 16 16 C 1.37920 * 119.91747 * 0.02562 * 15 14 13 17 17 C 1.37915 * 120.04094 * 85.00197 * 12 9 7 18 18 C 1.51081 * 132.69624 * 0.02562 * 17 12 9 19 19 O 1.43942 * 105.96081 * 197.67431 * 18 17 12 20 20 C 1.43950 * 104.95578 * 331.55078 * 19 18 17 21 21 H 0.96997 * 119.99856 * 359.97438 * 1 2 3 22 22 H 1.00893 * 110.99987 * 59.99940 * 11 9 7 23 23 H 1.00899 * 110.99566 * 183.95606 * 11 9 7 24 24 H 1.07993 * 119.98564 * 0.02929 * 13 12 9 25 25 H 1.07993 * 119.98226 * 180.28925 * 14 13 12 26 26 H 1.08002 * 120.03641 * 179.97438 * 15 14 13 27 27 H 1.08997 * 110.15784 * 316.79762 * 18 17 12 28 28 H 1.09002 * 110.14859 * 78.48491 * 18 17 12 29 29 H 1.09003 * 110.14993 * 269.32560 * 20 19 18 30 30 H 1.08994 * 110.15244 * 147.57817 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5568 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6446 0.0018 13 6 2.6016 -4.2396 -1.1906 14 6 3.5002 -5.2898 -1.1896 15 6 4.0292 -5.7476 0.0040 16 6 3.6582 -5.1550 1.1929 17 6 2.7572 -4.1012 1.1918 18 6 2.5599 -3.6785 2.6287 19 8 3.6705 -4.2301 3.3597 20 6 4.0440 -5.4137 2.6305 21 1 -0.4850 0.8400 0.0004 22 1 0.9652 -2.5260 -2.0380 23 1 -0.1570 -3.4139 -1.1906 24 1 2.1897 -3.8828 -2.1230 25 1 3.7930 -5.7506 -2.1214 26 1 4.7310 -6.5685 0.0048 27 1 2.5636 -2.5911 2.7042 28 1 1.6210 -4.0781 3.0121 29 1 3.5024 -6.2781 3.0149 30 1 5.1186 -5.5786 2.7074 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261281582.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:55 Heat of formation + Delta-G solvation = -9.592117 kcal Electronic energy + Delta-G solvation = -14646.383534 eV Core-core repulsion = 12213.644296 eV Total energy + Delta-G solvation = -2432.739238 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.22435 -37.20650 -34.57988 -31.77838 -30.88247 -29.86885 -27.18433 -26.11452 -24.27790 -22.43469 -20.98858 -19.45764 -16.50936 -16.19109 -15.89726 -15.65618 -15.01674 -14.56422 -14.17613 -13.48144 -13.29918 -12.85735 -12.44636 -12.19216 -12.15446 -11.66964 -11.46382 -10.91721 -10.87791 -10.56233 -10.51727 -9.84802 -9.65193 -9.34916 -8.47094 -8.12632 -7.94220 -7.14954 -5.91216 -4.07009 1.71699 1.90130 3.34300 3.38781 3.42106 4.16513 4.30801 4.48396 4.68611 5.13831 5.32255 5.35896 5.48709 5.57771 5.61366 5.88609 5.91622 6.08500 6.19413 6.24161 6.43770 6.58634 6.75661 6.85058 6.93667 7.15991 7.44879 7.46946 7.87033 8.13242 8.57706 8.94485 9.09544 9.62160 11.12785 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.009945 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.218900 B = 2814.807452 C = 3252.405073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.085 3.915 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.253 3.747 10 H 0.049 0.951 11 N -0.811 5.811 12 C -0.046 4.046 13 C -0.126 4.126 14 C -0.119 4.119 15 C -0.121 4.121 16 C -0.142 4.142 17 C -0.123 4.123 18 C 0.092 3.908 19 O -0.368 6.368 20 C 0.095 3.905 21 H 0.257 0.743 22 H 0.318 0.682 23 H 0.299 0.701 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 -10.090 0.802 11.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.122 4.122 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.143 3.857 10 H 0.067 0.933 11 N -0.337 5.337 12 C -0.049 4.049 13 C -0.144 4.144 14 C -0.137 4.137 15 C -0.140 4.140 16 C -0.142 4.142 17 C -0.124 4.124 18 C 0.016 3.984 19 O -0.286 6.286 20 C 0.018 3.982 21 H 0.067 0.933 22 H 0.132 0.868 23 H 0.109 0.891 24 H 0.140 0.860 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.622 -9.187 1.270 10.363 hybrid contribution 1.016 -0.079 -0.566 1.166 sum 5.639 -9.267 0.704 10.870 Atomic orbital electron populations 1.70092 1.05657 1.25932 1.46334 1.24937 0.94656 0.98536 0.94075 0.86804 0.79749 0.83542 0.78660 1.20333 1.21283 1.20240 1.20725 0.92160 0.89212 1.54916 0.92909 1.18212 0.87515 0.88895 0.91053 0.93336 1.59153 1.28092 1.42070 1.04376 1.21167 0.97261 0.96058 0.90384 1.21007 0.98845 0.96510 0.98047 1.20992 0.97898 0.97619 0.97149 1.20108 1.01740 1.01071 0.91040 1.21016 0.99740 0.98103 0.95334 1.20750 0.98730 0.97234 0.95699 1.21745 0.89039 1.00875 0.86718 1.89034 1.50616 1.40125 1.48854 1.21626 1.00528 0.88917 0.87131 0.93301 0.86844 0.89086 0.86045 0.86473 0.86858 0.87266 0.91199 0.91396 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.20 12.77 55.43 0.71 -23.49 16 2 C 0.09 2.34 5.39 -17.82 -0.10 2.24 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -14.36 8.71 -34.44 -0.30 -14.66 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.25 6.11 2.73 -70.01 -0.19 5.92 16 10 H 0.05 1.28 7.96 -51.93 -0.41 0.87 16 11 N -0.81 -18.50 8.14 -6.65 -0.05 -18.56 16 12 C -0.05 -0.97 4.98 -104.70 -0.52 -1.49 16 13 C -0.13 -2.32 9.27 -39.55 -0.37 -2.69 16 14 C -0.12 -1.89 10.05 -39.55 -0.40 -2.29 16 15 C -0.12 -1.90 10.04 -39.66 -0.40 -2.29 16 16 C -0.14 -2.45 6.32 -104.40 -0.66 -3.11 16 17 C -0.12 -2.45 6.11 -104.40 -0.64 -3.08 16 18 C 0.09 1.73 7.30 36.19 0.26 1.99 16 19 O -0.37 -6.62 11.72 -35.23 -0.41 -7.03 16 20 C 0.09 1.43 7.63 36.19 0.28 1.70 16 21 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 22 H 0.32 6.90 7.21 -39.30 -0.28 6.62 16 23 H 0.30 6.07 9.06 -39.29 -0.36 5.72 16 24 H 0.12 2.11 6.30 -52.49 -0.33 1.78 16 25 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 26 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.11 2.20 8.14 -51.93 -0.42 1.78 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 257.28 15.07 3.88 3.88 Total: -1.00 -29.63 257.28 -7.39 -37.02 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -3.46 Total: 9.69 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -3.03 Total: -17.75 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.65 Total: -42.04 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.41 Total: -7.03 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.63 -7.39 -37.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281582.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.429 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds