Wall clock time and date at job start Mon Mar 30 2020 02:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99924 * 2 1 4 4 H 1.48502 * 109.46848 * 239.99856 * 3 2 1 5 5 H 1.48507 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47167 * 119.99709 * 3 2 1 7 7 C 1.37875 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00160 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47034 * 299.99659 * 9 7 2 11 11 N 1.46898 * 109.47099 * 59.99747 * 9 7 2 12 12 C 1.50700 * 109.46998 * 180.02562 * 9 7 2 13 13 C 1.38337 * 120.03593 * 264.97568 * 12 9 7 14 14 C 1.38224 * 120.03918 * 179.97438 * 13 12 9 15 15 C 1.38345 * 120.03997 * 0.02562 * 14 13 12 16 16 C 1.37920 * 119.91747 * 0.02562 * 15 14 13 17 17 C 1.37915 * 120.04094 * 85.00197 * 12 9 7 18 18 C 1.51081 * 132.69624 * 0.02562 * 17 12 9 19 19 O 1.43942 * 105.96081 * 197.67431 * 18 17 12 20 20 C 1.43950 * 104.95578 * 331.55078 * 19 18 17 21 21 H 0.96997 * 119.99856 * 359.97438 * 1 2 3 22 22 H 1.00893 * 110.99987 * 59.99940 * 11 9 7 23 23 H 1.00899 * 110.99566 * 183.95606 * 11 9 7 24 24 H 1.07993 * 119.98564 * 0.02929 * 13 12 9 25 25 H 1.07993 * 119.98226 * 180.28925 * 14 13 12 26 26 H 1.08002 * 120.03641 * 179.97438 * 15 14 13 27 27 H 1.08997 * 110.15784 * 316.79762 * 18 17 12 28 28 H 1.09002 * 110.14859 * 78.48491 * 18 17 12 29 29 H 1.09003 * 110.14993 * 269.32560 * 20 19 18 30 30 H 1.08994 * 110.15244 * 147.57817 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5568 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6446 0.0018 13 6 2.6016 -4.2396 -1.1906 14 6 3.5002 -5.2898 -1.1896 15 6 4.0292 -5.7476 0.0040 16 6 3.6582 -5.1550 1.1929 17 6 2.7572 -4.1012 1.1918 18 6 2.5599 -3.6785 2.6287 19 8 3.6705 -4.2301 3.3597 20 6 4.0440 -5.4137 2.6305 21 1 -0.4850 0.8400 0.0004 22 1 0.9652 -2.5260 -2.0380 23 1 -0.1570 -3.4139 -1.1906 24 1 2.1897 -3.8828 -2.1230 25 1 3.7930 -5.7506 -2.1214 26 1 4.7310 -6.5685 0.0048 27 1 2.5636 -2.5911 2.7042 28 1 1.6210 -4.0781 3.0121 29 1 3.5024 -6.2781 3.0149 30 1 5.1186 -5.5786 2.7074 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261281582.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:54 Heat of formation + Delta-G solvation = -30.044910 kcal Electronic energy + Delta-G solvation = -14647.270434 eV Core-core repulsion = 12213.644296 eV Total energy + Delta-G solvation = -2433.626138 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.59394 -38.64009 -36.30819 -33.74473 -32.25691 -31.38397 -28.57250 -28.06046 -25.73341 -24.11791 -22.35670 -21.00985 -18.53167 -17.58748 -17.25887 -17.06601 -16.60200 -16.26559 -15.98859 -14.95074 -14.78801 -14.29672 -14.18930 -13.69536 -13.49959 -13.30755 -13.08754 -12.76152 -12.63126 -12.23459 -12.03040 -11.55716 -11.34443 -11.02561 -10.57897 -9.49596 -9.42536 -8.93105 -8.00684 -6.22541 0.35917 0.52067 1.41746 1.42066 1.49761 2.43635 2.82122 2.97804 3.22418 3.39527 3.77971 4.10627 4.18500 4.35783 4.41019 4.50058 4.50676 4.62882 4.67637 4.84163 5.00057 5.17144 5.27166 5.41482 5.53281 5.67495 5.74701 5.84082 6.07610 6.18585 6.62858 7.07015 7.23767 7.49802 9.02027 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.009945 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.218900 B = 2814.807452 C = 3252.405073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.039 3.961 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.039 0.961 9 C 0.261 3.739 10 H 0.012 0.988 11 N -0.820 5.820 12 C -0.074 4.074 13 C -0.138 4.138 14 C -0.110 4.110 15 C -0.112 4.112 16 C -0.144 4.144 17 C -0.155 4.155 18 C 0.096 3.904 19 O -0.382 6.382 20 C 0.091 3.909 21 H 0.257 0.743 22 H 0.325 0.675 23 H 0.312 0.688 24 H 0.125 0.875 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -11.826 0.209 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.057 0.943 9 C 0.151 3.849 10 H 0.030 0.970 11 N -0.348 5.348 12 C -0.077 4.077 13 C -0.156 4.156 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.144 4.144 17 C -0.156 4.156 18 C 0.020 3.980 19 O -0.301 6.301 20 C 0.016 3.984 21 H 0.066 0.934 22 H 0.138 0.862 23 H 0.124 0.876 24 H 0.143 0.857 25 H 0.174 0.826 26 H 0.174 0.826 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.465 -10.935 0.676 12.721 hybrid contribution 0.498 0.342 -0.381 0.714 sum 6.963 -10.593 0.295 12.680 Atomic orbital electron populations 1.70206 1.06872 1.26507 1.47642 1.25623 0.95418 1.01564 0.93938 0.85868 0.78599 0.79960 0.78601 1.19888 1.20755 1.20081 1.20967 0.91674 0.91003 1.54269 0.94276 1.17794 0.87677 0.89494 0.89979 0.97023 1.58946 1.28476 1.43173 1.04214 1.20864 0.98260 0.96356 0.92197 1.21150 0.99821 0.97519 0.97123 1.21424 0.96115 0.96131 0.99117 1.20626 1.01159 1.01194 0.89947 1.21394 0.98692 0.97123 0.97175 1.20915 1.00239 0.98952 0.95458 1.21576 0.89885 0.99382 0.87151 1.89002 1.50262 1.41562 1.49238 1.21938 1.02568 0.88415 0.85519 0.93442 0.86162 0.87614 0.85690 0.82631 0.82595 0.90131 0.90417 0.88812 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.45 12.77 21.45 0.27 -51.18 16 2 C 0.04 2.17 5.39 84.65 0.46 2.62 16 3 Si 0.94 44.39 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.54 -30.12 8.71 25.60 0.22 -29.89 16 8 H 0.04 2.23 7.74 -2.91 -0.02 2.21 16 9 C 0.26 13.07 2.73 43.43 0.12 13.19 16 10 H 0.01 0.67 7.96 -2.39 -0.02 0.65 16 11 N -0.82 -38.33 8.14 -174.95 -1.42 -39.75 16 12 C -0.07 -3.15 4.98 -19.92 -0.10 -3.25 16 13 C -0.14 -4.92 9.27 22.29 0.21 -4.71 16 14 C -0.11 -3.10 10.05 22.29 0.22 -2.88 16 15 C -0.11 -3.00 10.04 22.22 0.22 -2.77 16 16 C -0.14 -4.59 6.32 -19.72 -0.12 -4.71 16 17 C -0.15 -6.14 6.11 -19.72 -0.12 -6.26 16 18 C 0.10 3.72 7.30 71.36 0.52 4.24 16 19 O -0.38 -13.42 11.72 -148.98 -1.75 -15.17 16 20 C 0.09 2.48 7.63 71.36 0.54 3.03 16 21 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 22 H 0.32 14.27 7.21 -89.70 -0.65 13.62 16 23 H 0.31 12.97 9.06 -89.69 -0.81 12.16 16 24 H 0.13 4.23 6.30 -2.91 -0.02 4.22 16 25 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 26 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 27 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 28 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -64.96 257.28 1.01 -63.95 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.29 Total: 27.14 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 2.17 Total: -31.41 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -1.15 Total: -90.93 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -1.75 Total: -15.17 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.96 1.01 -63.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281582.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.908 kcal (2) G-P(sol) polarization free energy of solvation -64.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds