Wall clock time and date at job start Mon Mar 30 2020 03:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34903 * 127.04500 * 2 1 4 4 N 1.36900 * 109.25758 * 180.02562 * 3 2 1 5 5 H 0.97000 * 124.78224 * 180.12440 * 4 3 2 6 6 C 1.33676 * 110.43544 * 0.09233 * 4 3 2 7 7 C 1.38977 * 107.65920 * 359.84769 * 6 4 3 8 8 C 1.46664 * 121.98572 * 180.17110 * 7 6 4 9 9 O 1.21347 * 122.46738 * 191.26054 * 8 7 6 10 10 C 1.52198 * 115.06990 * 11.27654 * 8 7 6 11 11 C 1.53200 * 108.38806 * 317.52615 * 10 8 7 12 12 H 1.09003 * 109.22212 * 304.43669 * 11 10 8 13 13 C 1.50694 * 109.22754 * 185.04043 * 11 10 8 14 14 H 1.08000 * 120.00563 * 239.39696 * 13 11 10 15 15 C 1.37885 * 119.99902 * 59.39859 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.50707 * 129.58881 * 179.72270 * 6 4 3 22 22 H 1.08997 * 109.47117 * 269.97410 * 1 2 3 23 23 H 1.09008 * 109.46906 * 29.97010 * 1 2 3 24 24 H 1.09000 * 109.47259 * 149.96977 * 1 2 3 25 25 H 1.08005 * 125.37123 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.68313 * 197.80489 * 10 8 7 27 27 H 1.08995 * 109.71669 * 77.27022 * 10 8 7 28 28 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 29 29 H 1.09001 * 109.53940 * 80.70254 * 21 6 4 30 30 H 1.08998 * 109.47213 * 320.56335 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3197 1.0767 0.0000 4 7 3.6232 0.6585 -0.0006 5 1 4.3935 1.2481 0.0010 6 6 3.6850 -0.6768 -0.0030 7 6 2.3816 -1.1591 -0.0005 8 6 2.0847 -2.5954 0.0015 9 8 0.9693 -3.0303 -0.1962 10 6 3.2786 -3.5003 0.2704 11 6 4.4773 -2.9665 -0.5203 12 1 4.2089 -2.8951 -1.5743 13 6 5.6363 -3.9174 -0.3667 14 1 6.5658 -3.5713 0.0605 15 6 5.5099 -5.2293 -0.7717 16 7 4.3778 -5.6509 -1.2916 17 14 6.9468 -6.4078 -0.5820 18 1 6.5575 -7.7486 -1.0881 19 1 8.1072 -5.9027 -1.3589 20 1 7.3178 -6.5092 0.8523 21 6 4.8895 -1.5825 -0.0101 22 1 -0.3633 -0.0005 1.0276 23 1 -0.3633 0.8903 -0.5134 24 1 -0.3634 -0.8897 -0.5143 25 1 1.9934 2.1063 0.0004 26 1 3.0493 -4.5160 -0.0519 27 1 3.5103 -3.4967 1.3354 28 1 4.2891 -6.5738 -1.5768 29 1 5.2854 -1.6706 1.0017 30 1 5.6538 -1.1655 -0.6658 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261293016.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:37 Heat of formation + Delta-G solvation = -13.633333 kcal Electronic energy + Delta-G solvation = -14604.074065 eV Core-core repulsion = 12171.159586 eV Total energy + Delta-G solvation = -2432.914478 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.87485 -37.67176 -35.19863 -32.33076 -31.91880 -28.46795 -27.87030 -26.04387 -24.63832 -21.54549 -20.61583 -18.92822 -17.27930 -17.06237 -16.15852 -14.74112 -14.53654 -14.24163 -13.57652 -13.26631 -13.19582 -12.94890 -12.61249 -12.41434 -12.20690 -11.79889 -11.42370 -10.98705 -10.77262 -10.69308 -10.27110 -9.93974 -9.61677 -9.34056 -8.51025 -8.26790 -8.15484 -7.53206 -6.05798 -4.16564 2.19098 2.72505 3.28570 3.34751 3.35309 3.53872 4.03490 4.37400 5.15585 5.25403 5.35691 5.54538 5.60726 5.73922 6.01786 6.06994 6.17149 6.26378 6.41157 6.51405 6.66335 6.71198 6.86105 7.12995 7.29326 7.41918 7.60254 7.80168 7.84064 8.00197 8.27536 8.76617 8.86805 9.49670 10.99008 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.046435 B = 0.008465 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.849169 B = 3306.883366 C = 3821.957697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.110 4.110 3 C -0.054 4.054 4 N -0.543 5.543 5 H 0.410 0.590 6 C 0.098 3.902 7 C -0.268 4.268 8 C 0.424 3.576 9 O -0.492 6.492 10 C -0.154 4.154 11 C 0.064 3.936 12 H 0.033 0.967 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.064 3.936 16 N -0.883 5.883 17 Si 0.896 3.104 18 H -0.286 1.286 19 H -0.277 1.277 20 H -0.276 1.276 21 C -0.050 4.050 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.161 0.839 26 H 0.121 0.879 27 H 0.070 0.930 28 H 0.265 0.735 29 H 0.078 0.922 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 11.423 2.999 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C -0.180 4.180 4 N -0.136 5.136 5 H 0.246 0.754 6 C -0.022 4.022 7 C -0.276 4.276 8 C 0.305 3.695 9 O -0.370 6.370 10 C -0.192 4.192 11 C 0.044 3.956 12 H 0.052 0.948 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.520 5.520 17 Si 0.723 3.277 18 H -0.212 1.212 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.088 4.088 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.178 0.822 26 H 0.139 0.861 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.298 11.140 2.811 11.562 hybrid contribution 1.206 -0.154 0.082 1.219 sum -0.092 10.986 2.893 11.361 Atomic orbital electron populations 1.20130 0.89995 1.02197 1.01417 1.20309 0.95097 0.91396 1.04752 1.21501 0.82292 0.98563 1.15667 1.41238 1.08001 1.06433 1.57928 0.75434 1.21725 0.97844 0.82908 0.99676 1.21405 0.91875 0.95317 1.18987 1.22645 0.89509 0.87716 0.69646 1.90385 1.26506 1.80175 1.39939 1.22535 0.93539 1.02571 1.00526 1.18581 0.93182 0.88160 0.95629 0.94847 1.21039 0.98139 0.94664 1.42236 0.92183 1.25005 0.95871 0.98319 0.94723 1.69847 1.24384 1.17040 1.40756 0.86602 0.82500 0.80076 0.78496 1.21205 1.20250 1.20176 1.20606 0.91174 0.95045 1.01947 0.92212 0.92595 0.90819 0.82209 0.86139 0.91186 0.92492 0.90417 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.34 36.00 0.37 -0.86 16 2 C -0.11 -1.94 6.34 -103.04 -0.65 -2.59 16 3 C -0.05 -0.78 11.82 -16.47 -0.19 -0.97 16 4 N -0.54 -7.71 5.87 -8.59 -0.05 -7.76 16 5 H 0.41 4.19 8.96 -40.82 -0.37 3.83 16 6 C 0.10 1.79 7.22 -81.51 -0.59 1.20 16 7 C -0.27 -5.57 6.28 -103.46 -0.65 -6.22 16 8 C 0.42 10.07 7.09 -30.17 -0.21 9.86 16 9 O -0.49 -12.67 17.16 5.50 0.09 -12.58 16 10 C -0.15 -3.74 5.25 -27.04 -0.14 -3.88 16 11 C 0.06 1.52 2.02 -91.59 -0.19 1.34 16 12 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 13 C -0.52 -13.47 8.55 -34.44 -0.29 -13.76 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 16 N -0.88 -24.86 11.24 55.43 0.62 -24.23 16 17 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 C -0.05 -0.94 5.45 -27.80 -0.15 -1.10 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 24 H 0.07 1.29 7.40 -51.93 -0.38 0.91 16 25 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 26 H 0.12 3.32 5.91 -51.93 -0.31 3.01 16 27 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 255.99 15.07 3.86 3.86 Total: -1.00 -30.71 255.99 -6.85 -37.56 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.56 Total: 3.11 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.79 Total: -15.40 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.57 Total: -32.00 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.71 -6.85 -37.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293016.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.926 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds