Wall clock time and date at job start Mon Mar 30 2020 03:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.24860 * 2 1 4 4 C 1.53380 * 109.25174 * 240.57084 * 2 1 3 5 5 C 1.51025 * 108.01038 * 183.97657 * 4 2 1 6 6 N 1.34459 * 129.40355 * 206.55119 * 5 4 2 7 7 H 0.96998 * 124.53374 * 359.38343 * 6 5 4 8 8 C 1.35946 * 110.93000 * 179.38236 * 6 5 4 9 9 C 1.39409 * 108.61819 * 0.43494 * 8 6 5 10 10 C 1.40891 * 127.32250 * 179.72347 * 9 8 6 11 11 H 1.08006 * 119.99537 * 161.26045 * 10 9 8 12 12 C 1.39888 * 120.00380 * 341.25871 * 10 9 8 13 13 N 1.30928 * 120.00694 * 165.03782 * 12 10 9 14 14 Si 1.86804 * 119.99707 * 345.03561 * 12 10 9 15 15 H 1.48501 * 109.47034 * 90.14451 * 14 12 10 16 16 H 1.48499 * 109.47382 * 210.14245 * 14 12 10 17 17 H 1.48504 * 109.47033 * 330.14586 * 14 12 10 18 18 C 1.38731 * 121.89530 * 26.19877 * 5 4 2 19 19 C 1.41535 * 122.74763 * 0.86062 * 18 5 4 20 20 O 1.21397 * 121.24510 * 181.85097 * 19 18 5 21 21 C 1.51399 * 117.49799 * 1.86808 * 19 18 5 22 22 H 1.09005 * 109.47292 * 300.53454 * 1 2 3 23 23 H 1.09002 * 109.47336 * 60.53388 * 1 2 3 24 24 H 1.09002 * 109.47467 * 180.53287 * 1 2 3 25 25 H 1.09001 * 109.75774 * 64.34790 * 4 2 1 26 26 H 1.09005 * 109.75477 * 303.60063 * 4 2 1 27 27 H 1.08000 * 125.69274 * 180.16527 * 8 6 5 28 28 H 0.96998 * 120.00285 * 180.02562 * 13 12 10 29 29 H 1.08999 * 109.37484 * 88.34184 * 21 19 18 30 30 H 1.08996 * 109.38119 * 208.00056 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8893 1.0290 0.0000 4 6 2.0357 -0.7115 -1.2612 5 6 3.5423 -0.7827 -1.1847 6 7 4.4450 -0.8533 -2.1788 7 1 4.2228 -0.8765 -3.1227 8 6 5.7107 -0.8879 -1.6839 9 6 5.6455 -0.8478 -0.2919 10 6 6.7238 -0.8696 0.6147 11 1 6.5809 -0.5353 1.6318 12 6 7.9793 -1.3241 0.1977 13 7 9.0396 -1.0785 0.9256 14 14 8.1433 -2.2816 -1.3979 15 1 8.3918 -1.3385 -2.5178 16 1 9.2789 -3.2324 -1.2903 17 1 6.8894 -3.0349 -1.6542 18 6 4.2159 -0.7757 0.0281 19 6 3.5478 -0.7197 1.2746 20 8 4.1656 -0.6814 2.3189 21 6 2.0340 -0.7098 1.2565 22 1 -0.3634 0.5221 0.8852 23 1 -0.3634 0.5055 -0.8947 24 1 -0.3634 -1.0276 0.0096 25 1 1.7379 -0.1489 -2.1461 26 1 1.6212 -1.7186 -1.3073 27 1 6.6156 -0.9422 -2.2710 28 1 9.9102 -1.3934 0.6361 29 1 1.6655 -1.7356 1.2647 30 1 1.6651 -0.1878 2.1393 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261301705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:18 Heat of formation + Delta-G solvation = -16.188363 kcal Electronic energy + Delta-G solvation = -14685.189482 eV Core-core repulsion = 12252.164209 eV Total energy + Delta-G solvation = -2433.025273 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.17151 -37.58149 -35.77389 -33.42307 -30.54403 -29.65516 -28.13533 -26.04804 -24.14531 -21.53977 -20.55032 -19.70458 -17.23228 -16.84137 -16.27523 -15.01416 -14.54737 -14.26409 -13.69400 -13.60551 -13.36683 -13.11839 -12.81874 -12.30540 -12.06363 -11.59842 -11.36491 -11.29026 -10.91512 -10.63850 -10.47312 -10.36494 -10.16830 -9.57469 -9.16854 -8.32427 -7.64391 -6.94747 -6.69153 -4.15399 2.37308 3.05865 3.22574 3.33131 3.59973 4.07613 4.15694 4.32207 4.97094 5.08377 5.10838 5.42521 5.48645 5.66147 5.73626 5.77942 5.81221 5.91232 6.01600 6.19819 6.26034 6.35637 6.51760 6.75721 6.95728 7.21300 7.52663 7.85711 8.11021 8.48961 8.68943 8.92263 9.07638 9.12189 10.35110 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.042202 B = 0.009983 C = 0.008349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.320546 B = 2803.988193 C = 3352.820731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.075 0.925 4 C -0.039 4.039 5 C 0.052 3.948 6 N -0.505 5.505 7 H 0.396 0.604 8 C -0.232 4.232 9 C 0.097 3.903 10 C -0.413 4.413 11 H 0.100 0.900 12 C 0.080 3.920 13 N -0.820 5.820 14 Si 0.912 3.088 15 H -0.275 1.275 16 H -0.296 1.296 17 H -0.246 1.246 18 C -0.319 4.319 19 C 0.414 3.586 20 O -0.495 6.495 21 C -0.157 4.157 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.281 0.719 29 H 0.084 0.916 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.859 -0.141 -7.391 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.094 0.906 4 C -0.078 4.078 5 C -0.073 4.073 6 N -0.096 5.096 7 H 0.229 0.771 8 C -0.356 4.356 9 C 0.091 3.909 10 C -0.443 4.443 11 H 0.118 0.882 12 C -0.136 4.136 13 N -0.447 5.447 14 Si 0.741 3.259 15 H -0.202 1.202 16 H -0.223 1.223 17 H -0.170 1.170 18 C -0.330 4.330 19 C 0.299 3.701 20 O -0.376 6.376 21 C -0.195 4.195 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.160 0.840 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.215 -0.138 -6.882 14.020 hybrid contribution 0.226 -0.461 -1.374 1.467 sum -11.989 -0.599 -8.256 14.569 Atomic orbital electron populations 1.21848 0.94998 1.01811 1.01642 1.20976 0.94915 1.00194 0.93536 0.90609 1.20253 0.88644 1.00814 0.98048 1.20803 0.90858 1.06986 0.88622 1.40586 1.06305 1.55744 1.06918 0.77099 1.21837 0.85070 1.34221 0.94503 1.18141 0.90731 0.91983 0.90031 1.18946 0.90501 1.35363 0.99490 0.88250 1.26088 0.95021 0.94481 0.97993 1.69721 0.99669 1.36924 1.38345 0.86382 0.78098 0.80087 0.81347 1.20211 1.22336 1.16978 1.19732 0.94232 1.26685 0.92330 1.19937 0.89067 0.73089 0.88033 1.90489 1.70350 1.41583 1.35217 1.22141 0.97209 1.01846 0.98257 0.92475 0.92723 0.92602 0.91432 0.90654 0.83997 0.90885 0.89773 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.17 37.16 0.34 -1.12 16 2 C -0.08 -1.05 2.66 -90.50 -0.24 -1.29 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.04 -0.54 5.59 -27.53 -0.15 -0.70 16 5 C 0.05 1.00 7.18 -81.10 -0.58 0.42 16 6 N -0.51 -9.66 5.83 -7.55 -0.04 -9.71 16 7 H 0.40 5.71 8.96 -40.82 -0.37 5.34 16 8 C -0.23 -5.47 9.33 -15.29 -0.14 -5.62 16 9 C 0.10 2.62 5.68 -105.05 -0.60 2.03 16 10 C -0.41 -12.38 9.62 -37.96 -0.37 -12.75 16 11 H 0.10 3.30 7.32 -52.48 -0.38 2.91 16 12 C 0.08 2.27 5.51 -17.32 -0.10 2.18 16 13 N -0.82 -23.58 13.93 55.55 0.77 -22.81 16 14 Si 0.91 21.47 24.54 -169.99 -4.17 17.30 16 15 H -0.27 -6.14 6.68 56.52 0.38 -5.77 16 16 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.25 -5.82 6.56 56.52 0.37 -5.45 16 18 C -0.32 -7.69 6.08 -105.05 -0.64 -8.33 16 19 C 0.41 9.60 6.94 -32.71 -0.23 9.38 16 20 O -0.50 -13.58 16.82 5.46 0.09 -13.49 16 21 C -0.16 -2.58 5.34 -27.61 -0.15 -2.73 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.14 3.28 4.19 -52.49 -0.22 3.06 16 28 H 0.28 7.28 8.30 -40.82 -0.34 6.94 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 248.46 15.07 3.74 3.74 Total: -1.00 -33.42 248.46 -5.99 -39.41 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.54 Total: 4.09 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -2.85 Total: -18.53 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.73 Total: -32.52 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.17 Total: 17.30 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.42 -5.99 -39.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.222 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds