Wall clock time and date at job start Mon Mar 30 2020 03:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.24860 * 2 1 4 4 C 1.53380 * 109.25174 * 240.57084 * 2 1 3 5 5 C 1.51025 * 108.01038 * 183.97657 * 4 2 1 6 6 N 1.34459 * 129.40355 * 206.55119 * 5 4 2 7 7 H 0.96998 * 124.53374 * 359.38343 * 6 5 4 8 8 C 1.35946 * 110.93000 * 179.38236 * 6 5 4 9 9 C 1.39409 * 108.61819 * 0.43494 * 8 6 5 10 10 C 1.40891 * 127.32250 * 179.72347 * 9 8 6 11 11 H 1.08006 * 119.99537 * 161.26045 * 10 9 8 12 12 C 1.39888 * 120.00380 * 341.25871 * 10 9 8 13 13 N 1.30928 * 120.00694 * 165.03782 * 12 10 9 14 14 Si 1.86804 * 119.99707 * 345.03561 * 12 10 9 15 15 H 1.48501 * 109.47034 * 90.14451 * 14 12 10 16 16 H 1.48499 * 109.47382 * 210.14245 * 14 12 10 17 17 H 1.48504 * 109.47033 * 330.14586 * 14 12 10 18 18 C 1.38731 * 121.89530 * 26.19877 * 5 4 2 19 19 C 1.41535 * 122.74763 * 0.86062 * 18 5 4 20 20 O 1.21397 * 121.24510 * 181.85097 * 19 18 5 21 21 C 1.51399 * 117.49799 * 1.86808 * 19 18 5 22 22 H 1.09005 * 109.47292 * 300.53454 * 1 2 3 23 23 H 1.09002 * 109.47336 * 60.53388 * 1 2 3 24 24 H 1.09002 * 109.47467 * 180.53287 * 1 2 3 25 25 H 1.09001 * 109.75774 * 64.34790 * 4 2 1 26 26 H 1.09005 * 109.75477 * 303.60063 * 4 2 1 27 27 H 1.08000 * 125.69274 * 180.16527 * 8 6 5 28 28 H 0.96998 * 120.00285 * 180.02562 * 13 12 10 29 29 H 1.08999 * 109.37484 * 88.34184 * 21 19 18 30 30 H 1.08996 * 109.38119 * 208.00056 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8893 1.0290 0.0000 4 6 2.0357 -0.7115 -1.2612 5 6 3.5423 -0.7827 -1.1847 6 7 4.4450 -0.8533 -2.1788 7 1 4.2228 -0.8765 -3.1227 8 6 5.7107 -0.8879 -1.6839 9 6 5.6455 -0.8478 -0.2919 10 6 6.7238 -0.8696 0.6147 11 1 6.5809 -0.5353 1.6318 12 6 7.9793 -1.3241 0.1977 13 7 9.0396 -1.0785 0.9256 14 14 8.1433 -2.2816 -1.3979 15 1 8.3918 -1.3385 -2.5178 16 1 9.2789 -3.2324 -1.2903 17 1 6.8894 -3.0349 -1.6542 18 6 4.2159 -0.7757 0.0281 19 6 3.5478 -0.7197 1.2746 20 8 4.1656 -0.6814 2.3189 21 6 2.0340 -0.7098 1.2565 22 1 -0.3634 0.5221 0.8852 23 1 -0.3634 0.5055 -0.8947 24 1 -0.3634 -1.0276 0.0096 25 1 1.7379 -0.1489 -2.1461 26 1 1.6212 -1.7186 -1.3073 27 1 6.6156 -0.9422 -2.2710 28 1 9.9102 -1.3934 0.6361 29 1 1.6655 -1.7356 1.2647 30 1 1.6651 -0.1878 2.1393 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:18 Heat of formation + Delta-G solvation = -41.206776 kcal Electronic energy + Delta-G solvation = -14686.274361 eV Core-core repulsion = 12252.164209 eV Total energy + Delta-G solvation = -2434.110153 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.86952 -39.36949 -37.14720 -35.46391 -32.44930 -31.09650 -29.58590 -27.54564 -25.88975 -23.21600 -21.89020 -21.47025 -18.83814 -18.53438 -18.26058 -16.58498 -16.22561 -15.93342 -15.29143 -15.17493 -14.99657 -14.82109 -14.45913 -13.57826 -13.48606 -13.05008 -12.79589 -12.67960 -12.61370 -12.39326 -11.96216 -11.63844 -11.54139 -11.49361 -11.14980 -10.13803 -9.59626 -8.77794 -8.73275 -6.30717 0.66293 1.17334 1.32416 1.47489 1.69946 2.16474 2.51036 2.60340 3.35042 3.65543 3.95455 3.99130 4.07883 4.45659 4.64664 4.67654 4.73465 4.81921 4.85394 4.90261 5.06795 5.16074 5.25442 5.33079 5.43583 5.57656 5.74904 5.90725 6.22364 6.44284 6.80680 6.89362 7.10440 7.30504 8.33985 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.042202 B = 0.009983 C = 0.008349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.320546 B = 2803.988193 C = 3352.820731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 H 0.063 0.937 4 C -0.038 4.038 5 C 0.105 3.895 6 N -0.491 5.491 7 H 0.426 0.574 8 C -0.224 4.224 9 C 0.051 3.949 10 C -0.459 4.459 11 H 0.033 0.967 12 C 0.028 3.972 13 N -0.874 5.874 14 Si 0.987 3.013 15 H -0.248 1.248 16 H -0.284 1.284 17 H -0.245 1.245 18 C -0.377 4.377 19 C 0.398 3.602 20 O -0.561 6.561 21 C -0.145 4.145 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.152 0.848 28 H 0.290 0.710 29 H 0.109 0.891 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.654 -0.839 -11.574 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 H 0.081 0.919 4 C -0.075 4.075 5 C -0.023 4.023 6 N -0.084 5.084 7 H 0.265 0.735 8 C -0.349 4.349 9 C 0.045 3.955 10 C -0.491 4.491 11 H 0.051 0.949 12 C -0.182 4.182 13 N -0.503 5.503 14 Si 0.810 3.190 15 H -0.173 1.173 16 H -0.212 1.212 17 H -0.169 1.169 18 C -0.386 4.386 19 C 0.287 3.713 20 O -0.447 6.447 21 C -0.182 4.182 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.132 0.868 26 H 0.127 0.873 27 H 0.169 0.831 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.037 -0.819 -11.118 19.532 hybrid contribution 1.202 -0.174 -0.037 1.215 sum -14.836 -0.993 -11.155 18.588 Atomic orbital electron populations 1.21778 0.91187 1.03321 1.03071 1.21011 0.97806 0.98885 0.91650 0.91892 1.20631 0.83464 1.03604 0.99849 1.21627 0.93619 1.00560 0.86470 1.40539 1.04645 1.54516 1.08666 0.73451 1.21764 0.87260 1.32750 0.93082 1.18434 0.91749 0.93547 0.91732 1.18814 0.93431 1.39181 0.97653 0.94863 1.27071 0.93815 0.94997 1.02364 1.69794 1.00456 1.39079 1.40967 0.85271 0.78185 0.78748 0.76813 1.17303 1.21161 1.16872 1.20262 0.93921 1.29224 0.95228 1.21063 0.92658 0.70687 0.86912 1.90463 1.72632 1.44506 1.37121 1.22105 0.91284 1.04004 1.00847 0.92173 0.90385 0.91019 0.86812 0.87300 0.83081 0.90034 0.87322 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.17 71.98 0.66 -1.21 16 2 C -0.07 -1.67 2.66 -10.71 -0.03 -1.70 16 3 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.04 -0.79 5.59 30.08 0.17 -0.62 16 5 C 0.10 3.64 7.18 42.38 0.30 3.94 16 6 N -0.49 -16.68 5.83 -177.81 -1.04 -17.72 16 7 H 0.43 9.67 8.96 -92.71 -0.83 8.84 16 8 C -0.22 -10.21 9.33 84.34 0.79 -9.42 16 9 C 0.05 2.85 5.68 -20.14 -0.11 2.74 16 10 C -0.46 -30.05 9.62 23.32 0.22 -29.82 16 11 H 0.03 2.50 7.32 -2.91 -0.02 2.48 16 12 C 0.03 1.66 5.51 85.23 0.47 2.13 16 13 N -0.87 -53.99 13.93 21.82 0.30 -53.69 16 14 Si 0.99 45.05 24.54 68.60 1.68 46.73 16 15 H -0.25 -10.12 6.68 99.48 0.66 -9.45 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.25 -10.98 6.56 99.48 0.65 -10.33 16 18 C -0.38 -18.34 6.08 -20.14 -0.12 -18.47 16 19 C 0.40 19.07 6.94 26.72 0.19 19.26 16 20 O -0.56 -33.49 16.82 -3.39 -0.06 -33.55 16 21 C -0.14 -4.46 5.34 30.02 0.16 -4.30 16 22 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.15 6.60 4.19 -2.91 -0.01 6.58 16 28 H 0.29 15.92 8.30 -92.71 -0.77 15.15 16 29 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -85.31 248.46 3.82 -81.49 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.24 Total: 14.21 kcal Atomic # 6 Polarization: -40.17 SS G_CDS: 2.69 Total: -37.47 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -0.73 Total: -71.41 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.06 Total: -33.55 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.68 Total: 46.73 kcal Total: -85.31 3.82 -81.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.281 kcal (2) G-P(sol) polarization free energy of solvation -85.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds