Wall clock time and date at job start Mon Mar 30 2020 02:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48499 * 109.47452 * 270.00442 * 3 2 1 5 5 H 1.48503 * 109.46980 * 30.00560 * 3 2 1 6 6 H 1.48503 * 109.46973 * 150.00474 * 3 2 1 7 7 C 1.39928 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00123 * 197.88872 * 7 2 1 9 9 C 1.41412 * 119.99520 * 17.88909 * 7 2 1 10 10 C 1.40776 * 120.21231 * 24.45027 * 9 7 2 11 11 C 1.37643 * 119.89735 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32484 * 359.73392 * 11 10 9 13 13 C 1.39299 * 120.42203 * 0.52153 * 12 11 10 14 14 N 1.39681 * 119.95132 * 179.76288 * 13 12 11 15 15 C 1.46503 * 120.00353 * 359.44128 * 14 13 12 16 16 C 1.54029 * 113.82077 * 251.46640 * 15 14 13 17 17 O 1.44172 * 85.51658 * 223.19378 * 16 15 14 18 18 C 1.44169 * 93.34430 * 24.19215 * 17 16 15 19 19 C 1.38317 * 120.09514 * 359.48026 * 13 12 11 20 20 H 0.97003 * 120.00418 * 359.97438 * 1 2 3 21 21 H 1.08010 * 120.05281 * 359.97438 * 10 9 7 22 22 H 1.08006 * 119.83831 * 180.02562 * 11 10 9 23 23 H 1.07996 * 119.79308 * 180.28068 * 12 11 10 24 24 H 0.97004 * 120.00365 * 179.72259 * 14 13 12 25 25 H 1.09001 * 112.99326 * 23.45618 * 15 14 13 26 26 H 1.08998 * 113.86743 * 337.34537 * 16 15 14 27 27 H 1.09009 * 113.86426 * 109.04369 * 16 15 14 28 28 H 1.08993 * 113.87187 * 221.65730 * 18 17 16 29 29 H 1.09008 * 113.98251 * 89.96293 * 18 17 16 30 30 H 1.08004 * 120.15805 * 180.22889 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4397 2.6526 0.7002 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0488 -1.2344 0.2867 9 6 1.3522 -2.4066 -0.3773 10 6 0.2218 -2.3604 -1.2150 11 6 -0.4118 -3.5274 -1.5772 12 6 0.0605 -4.7489 -1.1259 13 6 1.1748 -4.8099 -0.2922 14 7 1.6398 -6.0465 0.1610 15 6 0.9484 -7.2774 -0.2304 16 6 0.1635 -7.9417 0.9164 17 8 0.7128 -9.1802 0.4236 18 6 1.8423 -8.5314 -0.1943 19 6 1.8250 -3.6480 0.0826 20 1 -0.4851 0.8400 0.0004 21 1 -0.1483 -1.4107 -1.5722 22 1 -1.2788 -3.4909 -2.2203 23 1 -0.4406 -5.6595 -1.4192 24 1 2.4181 -6.0902 0.7384 25 1 0.3777 -7.1703 -1.1528 26 1 0.5172 -7.6668 1.9101 27 1 -0.9189 -7.8665 0.8114 28 1 2.0915 -8.9239 -1.1801 29 1 2.7100 -8.4357 0.4586 30 1 2.6912 -3.6944 0.7260 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306181343.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:27 Heat of formation + Delta-G solvation = -9.534361 kcal Electronic energy + Delta-G solvation = -14065.526213 eV Core-core repulsion = 11632.789479 eV Total energy + Delta-G solvation = -2432.736734 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.38646 -39.37568 -36.30452 -34.64169 -31.70683 -30.55095 -27.75570 -27.48499 -27.12601 -23.05212 -22.38977 -21.08630 -19.30145 -17.65250 -17.58437 -17.03377 -16.73758 -16.35316 -16.28506 -14.93230 -14.69280 -14.13706 -13.96085 -13.82897 -13.53448 -13.20553 -12.84402 -12.71270 -12.31435 -12.17416 -12.07260 -11.60361 -11.20561 -11.07384 -10.72064 -10.46343 -9.35133 -8.61314 -8.00215 -6.32985 1.04024 1.32339 1.39914 1.52916 1.58851 2.22890 2.63163 2.77746 2.79437 3.44530 3.87257 3.98358 4.21552 4.37321 4.49469 4.62629 4.70182 4.85892 4.98942 5.11149 5.14276 5.16459 5.25888 5.40559 5.56733 5.91485 6.00354 6.19278 6.29910 6.60333 6.86974 6.98692 7.01884 7.21857 8.37004 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.065428 B = 0.005994 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.848265 B = 4670.363096 C = 4899.753748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.502 4.502 8 H 0.073 0.927 9 C 0.110 3.890 10 C -0.231 4.231 11 C -0.075 4.075 12 C -0.304 4.304 13 C 0.229 3.771 14 N -0.739 5.739 15 C 0.091 3.909 16 C 0.016 3.984 17 O -0.398 6.398 18 C 0.033 3.967 19 C -0.308 4.308 20 H 0.287 0.713 21 H 0.096 0.904 22 H 0.108 0.892 23 H 0.115 0.885 24 H 0.400 0.600 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -8.723 -0.124 8.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.532 4.532 8 H 0.091 0.909 9 C 0.107 3.893 10 C -0.252 4.252 11 C -0.094 4.094 12 C -0.327 4.327 13 C 0.129 3.871 14 N -0.372 5.372 15 C -0.016 4.016 16 C -0.063 4.063 17 O -0.316 6.316 18 C -0.044 4.044 19 C -0.332 4.332 20 H 0.098 0.902 21 H 0.114 0.886 22 H 0.126 0.874 23 H 0.133 0.867 24 H 0.235 0.765 25 H 0.129 0.871 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.737 -8.984 -0.172 9.152 hybrid contribution 0.440 1.049 0.304 1.177 sum 2.177 -7.935 0.131 8.229 Atomic orbital electron populations 1.69916 1.09055 1.30408 1.35585 1.26761 0.95455 1.04495 0.91165 0.85211 0.79062 0.75943 0.79488 1.18715 1.19230 1.18232 1.19819 0.98289 0.92632 1.42420 0.90882 1.17730 0.91081 0.92543 0.87917 1.21132 1.01768 0.96971 1.05339 1.20736 0.97930 0.92662 0.98111 1.20214 1.03377 0.97011 1.12108 1.17549 0.92413 0.85132 0.91985 1.44534 1.34257 1.01946 1.56506 1.24356 0.94644 0.83809 0.98799 1.24746 1.00860 0.81962 0.98706 1.89640 1.39339 1.28585 1.74080 1.24561 0.90835 0.89066 0.99957 1.20536 1.07301 0.91931 1.13416 0.90248 0.88620 0.87381 0.86731 0.76461 0.87114 0.89613 0.88458 0.87037 0.88608 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.09 10.95 21.82 0.24 -43.85 16 2 C 0.04 1.86 5.14 85.25 0.44 2.30 16 3 Si 0.98 38.76 29.60 68.60 2.03 40.79 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.50 -27.73 9.05 23.46 0.21 -27.52 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 9 C 0.11 6.11 5.57 -21.31 -0.12 6.00 16 10 C -0.23 -12.56 8.70 22.75 0.20 -12.37 16 11 C -0.08 -3.57 10.01 22.20 0.22 -3.35 16 12 C -0.30 -13.13 9.28 22.59 0.21 -12.92 16 13 C 0.23 9.83 6.64 38.16 0.25 10.09 16 14 N -0.74 -23.81 5.54 -350.53 -1.94 -25.75 16 15 C 0.09 2.41 4.31 45.69 0.20 2.60 16 16 C 0.02 0.39 9.02 72.27 0.65 1.04 16 17 O -0.40 -10.32 12.45 -148.98 -1.85 -12.17 16 18 C 0.03 0.70 8.97 72.27 0.65 1.35 16 19 C -0.31 -15.24 9.63 22.86 0.22 -15.02 16 20 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 21 H 0.10 5.45 6.15 -2.91 -0.02 5.43 16 22 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 23 H 0.11 4.23 6.01 -2.91 -0.02 4.22 16 24 H 0.40 11.48 8.74 -92.71 -0.81 10.67 16 25 H 0.11 3.04 6.10 -2.39 -0.01 3.03 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.10 1.75 8.12 -2.38 -0.02 1.73 16 30 H 0.09 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -61.44 258.06 1.95 -59.50 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.34 Total: 29.27 kcal Atomic # 6 Polarization: -50.92 SS G_CDS: 3.13 Total: -47.78 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -1.70 Total: -69.60 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -1.85 Total: -12.17 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -61.44 1.95 -59.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306181343.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.962 kcal (2) G-P(sol) polarization free energy of solvation -61.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds