Wall clock time and date at job start Mon Mar 30 2020 02:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99997 * 2 1 4 4 H 1.48503 * 109.46882 * 269.99849 * 3 2 1 5 5 H 1.48497 * 109.46938 * 29.99395 * 3 2 1 6 6 H 1.48498 * 109.47330 * 149.99676 * 3 2 1 7 7 C 1.38818 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99733 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00130 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00017 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.72227 * 325.57230 * 10 9 7 12 12 C 1.53405 * 109.69077 * 86.14534 * 10 9 7 13 13 O 1.42831 * 108.37479 * 184.39397 * 12 10 9 14 14 C 1.35855 * 117.77235 * 310.48060 * 13 12 10 15 15 C 1.39144 * 118.49515 * 196.82947 * 14 13 12 16 16 C 1.37973 * 120.21556 * 180.72505 * 15 14 13 17 17 C 1.38293 * 119.95552 * 0.26685 * 16 15 14 18 18 C 1.38107 * 119.98337 * 359.89042 * 17 16 15 19 19 C 1.38370 * 121.79955 * 17.95067 * 14 13 12 20 20 C 1.50775 * 121.40187 * 358.75599 * 19 14 13 21 21 H 0.96998 * 120.00051 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99814 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.68063 * 304.10808 * 12 10 9 24 24 H 1.08991 * 109.68410 * 64.63503 * 12 10 9 25 25 H 1.08002 * 119.89570 * 1.00949 * 15 14 13 26 26 H 1.07997 * 120.02385 * 180.23978 * 16 15 14 27 27 H 1.07996 * 120.00624 * 179.87502 * 17 16 15 28 28 H 1.08007 * 119.83817 * 180.02562 * 18 17 16 29 29 H 1.09001 * 109.43177 * 138.23309 * 20 19 14 30 30 H 1.08993 * 109.43148 * 258.09810 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.5630 -3.2127 0.5808 12 6 4.2871 -2.9667 -1.4401 13 8 4.9113 -4.2508 -1.4017 14 6 6.0296 -4.3887 -0.6426 15 6 6.8466 -5.4940 -0.8590 16 6 7.9830 -5.6770 -0.0982 17 6 8.3093 -4.7626 0.8867 18 6 7.4988 -3.6662 1.1063 19 6 6.3574 -3.4767 0.3450 20 6 5.5010 -2.2646 0.6106 21 1 -0.4850 0.8400 -0.0004 22 1 3.8646 -0.3620 0.0014 23 1 3.3125 -3.0466 -1.9216 24 1 4.9147 -2.2693 -1.9947 25 1 6.5930 -6.2086 -1.6281 26 1 8.6171 -6.5339 -0.2714 27 1 9.1975 -4.9061 1.4840 28 1 7.7561 -2.9533 1.8759 29 1 5.4065 -2.1160 1.6863 30 1 5.9667 -1.3865 0.1634 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306243231.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:17 Heat of formation + Delta-G solvation = -2.956808 kcal Electronic energy + Delta-G solvation = -14362.935600 eV Core-core repulsion = 11930.484091 eV Total energy + Delta-G solvation = -2432.451509 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36585 -37.31503 -35.50480 -32.81949 -31.17536 -30.09896 -28.68971 -25.38013 -23.91627 -22.50091 -21.64622 -19.70743 -17.68682 -17.49326 -16.26815 -15.62529 -14.92454 -14.44463 -14.27505 -13.85993 -13.54392 -13.18814 -13.00817 -12.76712 -12.47939 -11.75043 -11.42079 -11.23753 -11.09555 -10.81334 -10.44367 -10.35793 -10.04620 -9.68423 -9.04810 -8.66787 -7.96958 -7.40575 -5.86692 -3.25364 1.42543 1.56828 3.30753 3.33405 3.39173 3.65470 3.89249 4.49943 4.81890 4.90797 5.07881 5.21993 5.27608 5.39421 5.46763 5.56813 5.65015 5.72921 5.86625 5.98460 6.08141 6.15279 6.43620 6.46058 6.58655 6.62384 6.66421 6.94388 7.74802 7.88168 8.31513 9.07722 9.79617 9.97985 11.30896 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.055290 B = 0.007008 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.301161 B = 3994.278942 C = 4303.385593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.255 4.255 8 H 0.093 0.907 9 N -0.739 5.739 10 C 0.152 3.848 11 H 0.071 0.929 12 C 0.039 3.961 13 O -0.320 6.320 14 C 0.139 3.861 15 C -0.156 4.156 16 C -0.094 4.094 17 C -0.161 4.161 18 C -0.086 4.086 19 C -0.151 4.151 20 C -0.089 4.089 21 H 0.261 0.739 22 H 0.364 0.636 23 H 0.113 0.887 24 H 0.055 0.945 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.842 -7.582 0.114 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.186 4.186 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.111 0.889 9 N -0.383 5.383 10 C 0.042 3.958 11 H 0.089 0.911 12 C -0.038 4.038 13 O -0.233 6.233 14 C 0.093 3.907 15 C -0.175 4.175 16 C -0.112 4.112 17 C -0.180 4.180 18 C -0.104 4.104 19 C -0.152 4.152 20 C -0.126 4.126 21 H 0.071 0.929 22 H 0.197 0.803 23 H 0.131 0.869 24 H 0.073 0.927 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.101 0.899 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.454 -7.772 0.003 17.298 hybrid contribution 0.540 1.492 0.081 1.588 sum 15.993 -6.280 0.084 17.182 Atomic orbital electron populations 1.69696 1.05133 1.26057 1.56617 1.24679 0.95225 0.97263 1.01434 0.86569 0.79265 0.84910 0.77897 1.20912 1.21535 1.20248 1.19089 0.80220 0.94968 1.44209 0.88919 1.42669 1.04191 1.01407 1.90003 1.20750 0.91051 0.90523 0.93502 0.91124 1.24036 0.97776 0.81194 1.00832 1.85987 1.37667 1.34928 1.64689 1.18826 0.86988 0.94508 0.90361 1.20582 0.95320 0.98603 1.02963 1.20849 0.96067 0.98908 0.95380 1.20933 1.00828 0.95979 1.00218 1.20912 0.93534 0.97449 0.98539 1.19968 0.98454 0.98855 0.97932 1.20853 0.94771 0.94695 1.02324 0.92850 0.80289 0.86915 0.92673 0.85543 0.85890 0.86309 0.86073 0.89933 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.97 55.49 0.78 -27.82 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 21.48 27.74 -169.99 -4.71 16.76 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 7 C -0.26 -7.01 10.43 -15.06 -0.16 -7.17 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 9 N -0.74 -16.98 4.94 -53.19 -0.26 -17.24 16 10 C 0.15 2.96 3.01 -67.68 -0.20 2.75 16 11 H 0.07 1.48 8.08 -51.93 -0.42 1.06 16 12 C 0.04 0.71 6.63 37.37 0.25 0.96 16 13 O -0.32 -5.68 10.28 -19.28 -0.20 -5.88 16 14 C 0.14 2.25 6.47 -39.20 -0.25 2.00 16 15 C -0.16 -2.14 9.94 -39.34 -0.39 -2.54 16 16 C -0.09 -1.10 10.04 -39.66 -0.40 -1.49 16 17 C -0.16 -1.88 10.04 -39.61 -0.40 -2.28 16 18 C -0.09 -1.13 9.67 -39.53 -0.38 -1.51 16 19 C -0.15 -2.33 5.75 -104.44 -0.60 -2.93 16 20 C -0.09 -1.45 5.36 -27.81 -0.15 -1.60 16 21 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 22 H 0.36 8.13 5.64 -40.82 -0.23 7.90 16 23 H 0.11 2.15 8.14 -51.93 -0.42 1.73 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 26 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 27 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 LS Contribution 255.32 15.07 3.85 3.85 Total: -1.00 -30.24 255.32 -6.95 -37.20 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -3.62 Total: 6.72 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.78 Total: -13.60 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.51 Total: -45.06 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.20 Total: -5.88 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.24 -6.95 -37.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306243231.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.240 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds