Wall clock time and date at job start Mon Mar 30 2020 02:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86797 * 120.00184 * 2 1 4 4 H 1.48501 * 109.47392 * 239.99858 * 3 2 1 5 5 H 1.48500 * 109.47149 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47660 * 119.99693 * 3 2 1 7 7 C 1.38658 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99848 * 180.02562 * 7 2 1 9 9 O 1.34829 * 119.99587 * 0.02562 * 7 2 1 10 10 C 1.35759 * 116.99544 * 185.06697 * 9 7 2 11 11 C 1.38796 * 119.96369 * 354.38686 * 10 9 7 12 12 C 1.38072 * 119.85401 * 179.97438 * 11 10 9 13 13 C 1.38207 * 120.01364 * 0.02562 * 12 11 10 14 14 C 1.38543 * 120.36322 * 359.95205 * 13 12 11 15 15 C 1.38125 * 119.88529 * 0.05246 * 14 13 12 16 16 C 1.51363 * 109.78459 * 179.97438 * 15 14 13 17 17 H 1.09001 * 110.38509 * 223.84954 * 16 15 14 18 18 N 1.46901 * 110.30632 * 101.73975 * 16 15 14 19 19 C 1.54345 * 105.16328 * 342.81518 * 16 15 14 20 20 C 1.51685 * 130.27333 * 179.79592 * 14 13 12 21 21 H 0.96999 * 119.99852 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.07121 * 359.95951 * 11 10 9 23 23 H 1.08000 * 119.99198 * 179.97438 * 12 11 10 24 24 H 1.07995 * 119.82133 * 180.02562 * 13 12 11 25 25 H 1.00898 * 110.99570 * 182.80633 * 18 16 15 26 26 H 1.00898 * 110.99907 * 306.75799 * 18 16 15 27 27 H 1.09003 * 110.82445 * 144.55611 * 19 16 15 28 28 H 1.09005 * 110.82556 * 267.91708 * 19 16 15 29 29 H 1.09008 * 110.25034 * 78.33843 * 20 14 13 30 30 H 1.08992 * 110.49746 * 316.08965 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6965 1.2124 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1079 11 6 3.4562 -3.4371 0.0938 12 6 4.2017 -4.5940 0.2037 13 6 3.5678 -5.8159 0.3269 14 6 2.1844 -5.8888 0.3420 15 6 1.4332 -4.7349 0.2323 16 6 -0.0406 -5.0771 0.2739 17 1 -0.5819 -4.5182 -0.4896 18 7 -0.5937 -4.7884 1.6038 19 6 -0.1120 -6.5908 -0.0189 20 6 1.2670 -7.0909 0.4607 21 1 -0.4850 0.8400 -0.0004 22 1 3.9505 -2.4818 -0.0031 23 1 5.2805 -4.5442 0.1926 24 1 4.1540 -6.7188 0.4130 25 1 -1.5653 -5.0555 1.6570 26 1 -0.0541 -5.2416 2.3259 27 1 -0.9142 -7.0585 0.5520 28 1 -0.2405 -6.7735 -1.0859 29 1 1.2094 -7.4206 1.4981 30 1 1.6177 -7.9030 -0.1761 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306677472.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:47 Heat of formation + Delta-G solvation = -3.899182 kcal Electronic energy + Delta-G solvation = -14573.923903 eV Core-core repulsion = 12141.431530 eV Total energy + Delta-G solvation = -2432.492374 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.66505 -37.37173 -35.15662 -32.27637 -31.41571 -28.96400 -28.14148 -25.26098 -25.13091 -21.70080 -20.49815 -19.81347 -17.49737 -16.74200 -15.63328 -14.99580 -14.77471 -14.41324 -13.98565 -13.51883 -13.21025 -13.16947 -12.83354 -11.99806 -11.72985 -11.57566 -11.24461 -11.12207 -10.93767 -10.71673 -10.48722 -10.39952 -10.22947 -9.28172 -8.75843 -8.09958 -7.85668 -7.12960 -6.35863 -3.94323 2.15647 2.43275 3.17384 3.19009 3.21232 4.03027 4.54102 4.91362 5.01374 5.12959 5.20348 5.44517 5.49972 5.62602 5.75231 5.90582 5.99520 6.05459 6.18172 6.24019 6.36179 6.53446 6.77599 6.97372 7.15111 7.31580 7.41290 7.46141 7.72514 7.88688 8.01562 8.07395 9.08658 9.81399 10.81302 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.036344 B = 0.009174 C = 0.007561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.240864 B = 3051.465762 C = 3702.110531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.938 3.062 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.394 4.394 8 H 0.089 0.911 9 O -0.164 6.164 10 C 0.181 3.819 11 C -0.241 4.241 12 C -0.069 4.069 13 C -0.207 4.207 14 C -0.057 4.057 15 C -0.166 4.166 16 C 0.150 3.850 17 H 0.084 0.916 18 N -0.826 5.826 19 C -0.157 4.157 20 C -0.076 4.076 21 H 0.269 0.731 22 H 0.128 0.872 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.332 0.668 26 H 0.334 0.666 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.274 -9.731 0.855 10.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.164 4.164 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.470 4.470 8 H 0.107 0.893 9 O -0.066 6.066 10 C 0.126 3.874 11 C -0.260 4.260 12 C -0.087 4.087 13 C -0.226 4.226 14 C -0.058 4.058 15 C -0.168 4.168 16 C 0.039 3.961 17 H 0.102 0.898 18 N -0.354 5.354 19 C -0.197 4.197 20 C -0.113 4.113 21 H 0.079 0.921 22 H 0.146 0.854 23 H 0.127 0.873 24 H 0.120 0.880 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.966 -8.713 0.669 8.957 hybrid contribution 0.529 -0.185 0.066 0.565 sum 2.495 -8.898 0.735 9.270 Atomic orbital electron populations 1.70053 1.05857 1.27523 1.45612 1.25256 0.95790 0.98679 0.96637 0.85833 0.78731 0.80055 0.79091 1.19614 1.20318 1.19571 1.21277 0.91678 0.81110 1.52960 0.89333 1.84040 1.33920 1.11133 1.77477 1.18907 0.89773 0.87111 0.91628 1.21080 0.93494 0.99050 1.12388 1.20637 0.98339 0.92171 0.97562 1.20006 0.92677 0.96972 1.12933 1.20187 0.93224 0.94139 0.98259 1.19277 0.94357 0.91010 1.12142 1.20508 0.92441 0.91577 0.91579 0.89779 1.58691 1.05730 1.67071 1.03901 1.23153 0.96588 0.98313 1.01649 1.20996 0.93689 0.95771 1.00828 0.92118 0.85406 0.87349 0.88013 0.85503 0.85400 0.91494 0.91017 0.91185 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 2 C 0.04 1.15 5.49 -17.51 -0.10 1.06 16 3 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -11.27 9.48 30.89 0.29 -10.98 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 9 O -0.16 -4.78 9.71 0.02 0.00 -4.78 16 10 C 0.18 4.54 6.65 -39.06 -0.26 4.28 16 11 C -0.24 -5.45 9.16 -39.44 -0.36 -5.81 16 12 C -0.07 -1.32 10.04 -39.65 -0.40 -1.71 16 13 C -0.21 -3.77 10.04 -39.48 -0.40 -4.17 16 14 C -0.06 -1.07 6.14 -104.07 -0.64 -1.71 16 15 C -0.17 -3.62 5.66 -104.02 -0.59 -4.21 16 16 C 0.15 2.85 3.95 -67.83 -0.27 2.59 16 17 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 18 N -0.83 -14.94 9.29 -4.77 -0.04 -14.99 16 19 C -0.16 -2.28 6.75 -25.33 -0.17 -2.45 16 20 C -0.08 -1.11 6.80 -26.70 -0.18 -1.29 16 21 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.13 2.87 5.63 -52.49 -0.30 2.58 16 23 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 24 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 25 H 0.33 4.98 9.04 -39.29 -0.36 4.62 16 26 H 0.33 5.58 8.96 -39.29 -0.35 5.23 16 27 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 257.60 15.07 3.88 3.88 Total: -1.00 -31.62 257.60 -6.86 -38.48 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -3.37 Total: 10.72 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -3.07 Total: -24.41 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.71 Total: -39.81 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: 0.00 Total: -4.78 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.62 -6.86 -38.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306677472.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.584 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds