Wall clock time and date at job start Mon Mar 30 2020 03:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38149 * 120.51653 * 2 1 4 4 N 1.31789 * 120.92603 * 180.02562 * 3 2 1 5 5 C 1.31831 * 122.11024 * 0.02562 * 4 3 2 6 6 C 1.38096 * 120.92524 * 359.97438 * 5 4 3 7 7 C 1.40040 * 120.51901 * 180.02562 * 2 1 3 8 8 C 1.47539 * 120.94777 * 359.95655 * 7 2 1 9 9 O 1.20833 * 120.00098 * 354.15195 * 8 7 2 10 10 C 1.50701 * 120.00325 * 174.14649 * 8 7 2 11 11 H 1.09003 * 109.46292 * 35.00116 * 10 8 7 12 12 C 1.52995 * 109.47239 * 275.00481 * 10 8 7 13 13 C 1.50699 * 109.47017 * 155.00155 * 10 8 7 14 14 H 1.07995 * 120.00323 * 0.02562 * 13 10 8 15 15 C 1.37873 * 119.99467 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00834 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99644 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.46947 * 90.00111 * 17 15 13 19 19 H 1.48500 * 109.47169 * 209.99926 * 17 15 13 20 20 H 1.48495 * 109.47094 * 329.99919 * 17 15 13 21 21 H 1.08994 * 109.46781 * 263.63277 * 1 2 3 22 22 H 1.08998 * 109.46735 * 23.63507 * 1 2 3 23 23 H 1.08994 * 109.46689 * 143.63127 * 1 2 3 24 24 H 1.08003 * 119.53979 * 0.02562 * 3 2 1 25 25 H 1.08006 * 119.53630 * 179.97438 * 5 4 3 26 26 H 1.08001 * 120.51643 * 180.02562 * 6 5 4 27 27 H 1.08994 * 109.47264 * 299.99404 * 12 10 8 28 28 H 1.09007 * 109.47374 * 59.99896 * 12 10 8 29 29 H 1.08999 * 109.47140 * 179.97438 * 12 10 8 30 30 H 0.96996 * 120.00604 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1901 0.0000 4 7 3.5264 1.1996 -0.0005 5 6 4.2351 0.0879 -0.0015 6 6 3.6177 -1.1473 -0.0016 7 6 2.2182 -1.2064 -0.0005 8 6 1.5134 -2.5026 -0.0002 9 8 0.3103 -2.5361 0.1072 10 6 2.2940 -3.7848 -0.1338 11 1 3.2514 -3.6821 0.3770 12 6 2.5355 -4.0828 -1.6149 13 6 1.5129 -4.9151 0.4852 14 1 0.5477 -4.7243 0.9305 15 6 2.0307 -6.1930 0.4830 16 7 3.2058 -6.4256 -0.0596 17 14 1.0628 -7.5941 1.2510 18 1 0.1885 -8.2137 0.2229 19 1 2.0037 -8.6138 1.7804 20 1 0.2270 -7.0687 2.3602 21 1 -0.3633 -0.1140 1.0213 22 1 -0.3633 0.9415 -0.4120 23 1 -0.3632 -0.8275 -0.6094 24 1 1.6694 2.1260 0.0004 25 1 5.3137 0.1442 -0.0023 26 1 4.2048 -2.0538 -0.0020 27 1 1.5781 -4.1854 -2.1257 28 1 3.1004 -3.2651 -2.0627 29 1 3.1004 -5.0099 -1.7116 30 1 3.5699 -7.3246 -0.0615 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306954605.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:22 Heat of formation + Delta-G solvation = -28.099423 kcal Electronic energy + Delta-G solvation = -14453.030010 eV Core-core repulsion = 12019.488235 eV Total energy + Delta-G solvation = -2433.541775 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61670 -39.80406 -35.95521 -34.34968 -33.56261 -32.05720 -28.46829 -27.30316 -26.09878 -24.23682 -22.85578 -20.73573 -18.49663 -17.93187 -17.44052 -16.67465 -16.21364 -15.91410 -15.58899 -15.21104 -14.71875 -14.36718 -14.25003 -13.65120 -13.54415 -13.39142 -12.94663 -12.67102 -12.65002 -12.47360 -12.26435 -12.06212 -11.08454 -10.91079 -10.76453 -10.56403 -9.96627 -9.88474 -8.17984 -6.30341 -0.38071 0.12963 1.38943 1.40295 1.50496 1.61470 2.39245 2.84109 3.10194 3.17771 3.52170 3.81092 3.89761 3.99393 4.43610 4.47227 4.67827 4.71027 4.75617 4.85275 4.92743 4.97220 4.99520 5.12662 5.41004 5.47365 5.66863 5.68768 5.91064 6.17566 6.71409 6.80710 6.90893 7.37567 8.87269 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.043366 B = 0.008027 C = 0.007215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.517514 B = 3487.568085 C = 3879.753964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C 0.089 3.911 4 N -0.479 5.479 5 C 0.082 3.918 6 C -0.123 4.123 7 C -0.142 4.142 8 C 0.398 3.602 9 O -0.472 6.472 10 C 0.001 3.999 11 H 0.048 0.952 12 C -0.117 4.117 13 C -0.535 4.535 14 H 0.047 0.953 15 C 0.022 3.978 16 N -0.908 5.908 17 Si 0.953 3.047 18 H -0.276 1.276 19 H -0.275 1.275 20 H -0.276 1.276 21 H 0.072 0.928 22 H 0.096 0.904 23 H 0.065 0.935 24 H 0.191 0.809 25 H 0.192 0.808 26 H 0.150 0.850 27 H 0.021 0.979 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.992 11.702 -0.798 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.068 4.068 4 N -0.188 5.188 5 C -0.074 4.074 6 C -0.143 4.143 7 C -0.151 4.151 8 C 0.278 3.722 9 O -0.348 6.348 10 C -0.018 4.018 11 H 0.066 0.934 12 C -0.175 4.175 13 C -0.573 4.573 14 H 0.065 0.935 15 C -0.177 4.177 16 N -0.547 5.547 17 Si 0.779 3.221 18 H -0.201 1.201 19 H -0.200 1.200 20 H -0.201 1.201 21 H 0.091 0.909 22 H 0.115 0.885 23 H 0.084 0.916 24 H 0.208 0.792 25 H 0.209 0.791 26 H 0.167 0.833 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.931 12.315 -0.773 12.375 hybrid contribution -0.801 -1.973 0.374 2.162 sum 0.130 10.343 -0.400 10.351 Atomic orbital electron populations 1.20913 0.88957 1.03860 1.03112 1.21530 0.98815 0.93005 0.96579 1.23108 0.89761 0.97727 0.96254 1.67591 1.08656 1.32185 1.10416 1.23179 1.01839 0.86410 0.95944 1.22751 0.93524 1.01263 0.96714 1.21245 0.95776 0.95176 1.02919 1.23258 0.88815 0.90664 0.69509 1.90201 1.18001 1.89738 1.36854 1.19126 0.96354 0.90276 0.96066 0.93371 1.21497 0.99480 1.02093 0.94447 1.21266 1.04433 0.93491 1.38124 0.93466 1.25584 0.95919 1.00634 0.95600 1.69930 1.17789 1.22062 1.44921 0.85625 0.78665 0.79044 0.78760 1.20137 1.19961 1.20093 0.90915 0.88491 0.91602 0.79206 0.79101 0.83281 0.96015 0.93832 0.90621 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.15 8.84 71.24 0.63 -2.52 16 2 C -0.10 -2.99 5.94 -19.45 -0.12 -3.11 16 3 C 0.09 2.28 10.83 84.68 0.92 3.19 16 4 N -0.48 -13.01 10.33 -196.04 -2.03 -15.03 16 5 C 0.08 2.12 11.17 84.66 0.95 3.07 16 6 C -0.12 -3.82 9.48 22.68 0.21 -3.61 16 7 C -0.14 -5.17 5.90 -19.94 -0.12 -5.29 16 8 C 0.40 17.83 6.18 28.14 0.17 18.00 16 9 O -0.47 -22.88 12.97 -1.67 -0.02 -22.90 16 10 C 0.00 0.03 2.10 -12.29 -0.03 0.00 16 11 H 0.05 2.39 6.61 -2.39 -0.02 2.38 16 12 C -0.12 -5.47 8.95 71.98 0.64 -4.82 16 13 C -0.54 -30.12 8.33 25.60 0.21 -29.91 16 14 H 0.05 2.79 7.03 -2.91 -0.02 2.77 16 15 C 0.02 1.23 5.30 84.65 0.45 1.67 16 16 N -0.91 -50.11 11.32 21.45 0.24 -49.86 16 17 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.10 1.94 8.06 -2.39 -0.02 1.92 16 23 H 0.07 2.25 5.96 -2.39 -0.01 2.24 16 24 H 0.19 3.38 8.06 -2.91 -0.02 3.35 16 25 H 0.19 3.53 8.06 -2.91 -0.02 3.50 16 26 H 0.15 4.58 6.51 -2.91 -0.02 4.57 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.08 3.84 6.07 -2.39 -0.01 3.82 16 30 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -63.21 257.60 5.29 -57.92 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.14 Total: 7.31 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 3.93 Total: -23.31 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -1.78 Total: -64.90 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.02 Total: -22.90 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -63.21 5.29 -57.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306954605.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.817 kcal (2) G-P(sol) polarization free energy of solvation -63.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds