Wall clock time and date at job start Mon Mar 30 2020 03:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38149 * 120.51343 * 2 1 4 4 N 1.31804 * 120.91792 * 180.02562 * 3 2 1 5 5 C 1.31823 * 122.11532 * 0.02562 * 4 3 2 6 6 C 1.38102 * 120.92139 * 0.02562 * 5 4 3 7 7 C 1.40033 * 120.51498 * 180.02562 * 2 1 3 8 8 C 1.47540 * 120.95049 * 359.97438 * 7 2 1 9 9 O 1.20830 * 120.00038 * 354.08970 * 8 7 2 10 10 C 1.50706 * 119.99864 * 174.08829 * 8 7 2 11 11 H 1.08995 * 109.46994 * 330.00095 * 10 8 7 12 12 C 1.53000 * 109.47017 * 90.00138 * 10 8 7 13 13 C 1.50702 * 109.46832 * 209.99981 * 10 8 7 14 14 H 1.07999 * 120.00002 * 359.97438 * 13 10 8 15 15 C 1.37875 * 119.99855 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00146 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00189 * 180.02562 * 15 13 10 18 18 H 1.48504 * 109.47210 * 59.99541 * 17 15 13 19 19 H 1.48500 * 109.47361 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47182 * 299.99913 * 17 15 13 21 21 H 1.08997 * 109.47143 * 263.61046 * 1 2 3 22 22 H 1.09005 * 109.46850 * 23.61164 * 1 2 3 23 23 H 1.09001 * 109.46745 * 143.60985 * 1 2 3 24 24 H 1.07995 * 119.54583 * 0.02621 * 3 2 1 25 25 H 1.07997 * 119.54169 * 179.97438 * 5 4 3 26 26 H 1.08002 * 120.51373 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.47042 * 59.99704 * 12 10 8 28 28 H 1.08999 * 109.47055 * 179.97438 * 12 10 8 29 29 H 1.09000 * 109.47381 * 300.00321 * 12 10 8 30 30 H 0.96997 * 120.00583 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1902 0.0000 4 7 3.5265 1.1995 -0.0005 5 6 4.2352 0.0879 -0.0015 6 6 3.6177 -1.1474 -0.0027 7 6 2.2181 -1.2064 -0.0005 8 6 1.5133 -2.5026 -0.0006 9 8 0.3103 -2.5361 0.1077 10 6 2.2938 -3.7846 -0.1356 11 1 3.1923 -3.6026 -0.7252 12 6 2.6890 -4.2898 1.2535 13 6 1.4428 -4.8207 -0.8235 14 1 0.4372 -4.5755 -1.1318 15 6 1.9476 -6.0820 -1.0585 16 7 3.1720 -6.3808 -0.6828 17 14 0.8930 -7.3661 -1.9119 18 1 0.5104 -6.8758 -3.2605 19 1 1.6621 -8.6295 -2.0449 20 1 -0.3317 -7.6137 -1.1095 21 1 -0.3633 -0.1144 1.0212 22 1 -0.3633 0.9417 -0.4116 23 1 -0.3633 -0.8273 -0.6097 24 1 1.6695 2.1260 0.0004 25 1 5.3137 0.1440 -0.0023 26 1 4.2048 -2.0539 -0.0039 27 1 1.7905 -4.4718 1.8431 28 1 3.2532 -5.2173 1.1559 29 1 3.3045 -3.5404 1.7512 30 1 3.5273 -7.2681 -0.8484 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306954606.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:27 Heat of formation + Delta-G solvation = -11.392785 kcal Electronic energy + Delta-G solvation = -14450.430385 eV Core-core repulsion = 12017.613064 eV Total energy + Delta-G solvation = -2432.817321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.26303 -38.23062 -34.02788 -33.07783 -32.06482 -30.27736 -27.23513 -25.26910 -24.66322 -22.68273 -21.49402 -19.12805 -16.68446 -16.47973 -15.88167 -14.92121 -14.78096 -14.48549 -14.07240 -13.53114 -13.21953 -13.08592 -12.51782 -12.45986 -12.19597 -11.51754 -11.29573 -11.07207 -10.79782 -10.72348 -10.34450 -10.14393 -9.58773 -9.42589 -9.09093 -8.73261 -8.54891 -8.28822 -6.11282 -4.16972 0.99872 1.30657 3.17264 3.29639 3.33098 3.37985 4.10011 4.35157 4.58413 4.70817 4.97830 5.11444 5.18840 5.21700 5.65359 5.79368 5.88462 5.95236 6.06792 6.28793 6.34113 6.59897 6.70574 6.81434 6.86768 6.91283 7.40191 7.68292 7.91485 8.08282 8.14405 8.48880 8.86707 9.48162 10.95510 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.042002 B = 0.008087 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.472572 B = 3461.532385 C = 3849.372675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C 0.079 3.921 4 N -0.474 5.474 5 C 0.073 3.927 6 C -0.117 4.117 7 C -0.117 4.117 8 C 0.399 3.601 9 O -0.447 6.447 10 C 0.007 3.993 11 H 0.052 0.948 12 C -0.129 4.129 13 C -0.509 4.509 14 H 0.066 0.934 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.154 0.846 25 H 0.157 0.843 26 H 0.150 0.850 27 H 0.033 0.967 28 H 0.096 0.904 29 H 0.013 0.987 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 9.953 1.612 10.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.078 4.078 4 N -0.183 5.183 5 C -0.083 4.083 6 C -0.137 4.137 7 C -0.125 4.125 8 C 0.276 3.724 9 O -0.321 6.321 10 C -0.011 4.011 11 H 0.069 0.931 12 C -0.187 4.187 13 C -0.547 4.547 14 H 0.084 0.916 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.112 0.888 24 H 0.171 0.829 25 H 0.175 0.825 26 H 0.168 0.832 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.032 0.968 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.531 10.558 1.666 10.702 hybrid contribution -0.724 -1.482 -0.448 1.710 sum -0.193 9.076 1.218 9.159 Atomic orbital electron populations 1.20954 0.89669 1.03062 1.03525 1.21327 0.98135 0.93168 0.96699 1.22584 0.89894 0.97152 0.98192 1.67454 1.08262 1.32093 1.10540 1.22682 1.00268 0.87554 0.97782 1.22669 0.94420 1.00199 0.96427 1.21521 0.94797 0.96298 0.99934 1.23377 0.89176 0.89699 0.70184 1.90211 1.17065 1.89209 1.35611 1.19151 0.96523 0.89400 0.96071 0.93052 1.21691 0.99821 1.02239 0.94967 1.20994 1.00180 0.95871 1.37690 0.91620 1.24925 0.95116 0.98302 0.95539 1.69841 1.14943 1.21389 1.46891 0.86532 0.80333 0.80368 0.80100 1.20177 1.21184 1.20093 0.90675 0.92242 0.88798 0.82877 0.82541 0.83230 0.94803 0.88580 0.96751 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 8.84 36.01 0.32 -1.40 16 2 C -0.09 -1.49 5.94 -103.98 -0.62 -2.11 16 3 C 0.08 1.16 10.83 -17.60 -0.19 0.97 16 4 N -0.47 -7.28 10.33 -13.32 -0.14 -7.42 16 5 C 0.07 1.06 11.17 -17.61 -0.20 0.86 16 6 C -0.12 -1.91 9.41 -38.94 -0.37 -2.28 16 7 C -0.12 -2.16 5.90 -104.74 -0.62 -2.77 16 8 C 0.40 8.75 6.12 -30.51 -0.19 8.56 16 9 O -0.45 -10.49 13.11 5.94 0.08 -10.41 16 10 C 0.01 0.18 2.01 -92.92 -0.19 -0.01 16 11 H 0.05 1.25 6.80 -51.93 -0.35 0.90 16 12 C -0.13 -2.98 8.95 37.16 0.33 -2.64 16 13 C -0.51 -13.94 8.32 -34.44 -0.29 -14.23 16 14 H 0.07 1.86 7.14 -52.49 -0.37 1.48 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -24.43 11.32 55.43 0.63 -23.80 16 17 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 23 H 0.09 1.63 5.97 -51.93 -0.31 1.32 16 24 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 25 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.15 2.35 6.67 -52.49 -0.35 2.00 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 257.97 15.07 3.89 3.89 Total: -1.00 -29.24 257.97 -6.03 -35.27 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.37 Total: -0.26 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.09 Total: -13.45 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.49 Total: -31.22 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.24 -6.03 -35.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306954606.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.876 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds