Wall clock time and date at job start Mon Mar 30 2020 03:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38149 * 120.51343 * 2 1 4 4 N 1.31804 * 120.91792 * 180.02562 * 3 2 1 5 5 C 1.31823 * 122.11532 * 0.02562 * 4 3 2 6 6 C 1.38102 * 120.92139 * 0.02562 * 5 4 3 7 7 C 1.40033 * 120.51498 * 180.02562 * 2 1 3 8 8 C 1.47540 * 120.95049 * 359.97438 * 7 2 1 9 9 O 1.20830 * 120.00038 * 354.08970 * 8 7 2 10 10 C 1.50706 * 119.99864 * 174.08829 * 8 7 2 11 11 H 1.08995 * 109.46994 * 330.00095 * 10 8 7 12 12 C 1.53000 * 109.47017 * 90.00138 * 10 8 7 13 13 C 1.50702 * 109.46832 * 209.99981 * 10 8 7 14 14 H 1.07999 * 120.00002 * 359.97438 * 13 10 8 15 15 C 1.37875 * 119.99855 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00146 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00189 * 180.02562 * 15 13 10 18 18 H 1.48504 * 109.47210 * 59.99541 * 17 15 13 19 19 H 1.48500 * 109.47361 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47182 * 299.99913 * 17 15 13 21 21 H 1.08997 * 109.47143 * 263.61046 * 1 2 3 22 22 H 1.09005 * 109.46850 * 23.61164 * 1 2 3 23 23 H 1.09001 * 109.46745 * 143.60985 * 1 2 3 24 24 H 1.07995 * 119.54583 * 0.02621 * 3 2 1 25 25 H 1.07997 * 119.54169 * 179.97438 * 5 4 3 26 26 H 1.08002 * 120.51373 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.47042 * 59.99704 * 12 10 8 28 28 H 1.08999 * 109.47055 * 179.97438 * 12 10 8 29 29 H 1.09000 * 109.47381 * 300.00321 * 12 10 8 30 30 H 0.96997 * 120.00583 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1902 0.0000 4 7 3.5265 1.1995 -0.0005 5 6 4.2352 0.0879 -0.0015 6 6 3.6177 -1.1474 -0.0027 7 6 2.2181 -1.2064 -0.0005 8 6 1.5133 -2.5026 -0.0006 9 8 0.3103 -2.5361 0.1077 10 6 2.2938 -3.7846 -0.1356 11 1 3.1923 -3.6026 -0.7252 12 6 2.6890 -4.2898 1.2535 13 6 1.4428 -4.8207 -0.8235 14 1 0.4372 -4.5755 -1.1318 15 6 1.9476 -6.0820 -1.0585 16 7 3.1720 -6.3808 -0.6828 17 14 0.8930 -7.3661 -1.9119 18 1 0.5104 -6.8758 -3.2605 19 1 1.6621 -8.6295 -2.0449 20 1 -0.3317 -7.6137 -1.1095 21 1 -0.3633 -0.1144 1.0212 22 1 -0.3633 0.9417 -0.4116 23 1 -0.3633 -0.8273 -0.6097 24 1 1.6695 2.1260 0.0004 25 1 5.3137 0.1440 -0.0023 26 1 4.2048 -2.0539 -0.0039 27 1 1.7905 -4.4718 1.8431 28 1 3.2532 -5.2173 1.1559 29 1 3.3045 -3.5404 1.7512 30 1 3.5273 -7.2681 -0.8484 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306954606.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:27 Heat of formation + Delta-G solvation = -28.419736 kcal Electronic energy + Delta-G solvation = -14451.168729 eV Core-core repulsion = 12017.613064 eV Total energy + Delta-G solvation = -2433.555665 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.61636 -39.80661 -35.95759 -34.34874 -33.56303 -32.05482 -28.47102 -27.30973 -26.12257 -24.20472 -22.86049 -20.74435 -18.50344 -17.97738 -17.42616 -16.66380 -16.13381 -15.95404 -15.58359 -15.22807 -14.71387 -14.37219 -14.24188 -13.73334 -13.57312 -13.29292 -12.96673 -12.72870 -12.56460 -12.46721 -12.26216 -12.10076 -11.10829 -10.91506 -10.76283 -10.56458 -9.96383 -9.88919 -8.18200 -6.30860 -0.38242 0.12866 1.39788 1.40674 1.48606 1.61592 2.39078 2.84165 3.09463 3.18069 3.52134 3.80950 3.89697 3.99366 4.43502 4.47596 4.67426 4.71729 4.75074 4.84815 4.92415 4.97307 4.99882 5.12164 5.40299 5.47693 5.66036 5.68659 5.90622 6.17126 6.70423 6.79752 6.90772 7.36781 8.86853 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.042002 B = 0.008087 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.472572 B = 3461.532385 C = 3849.372675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C 0.089 3.911 4 N -0.479 5.479 5 C 0.082 3.918 6 C -0.122 4.122 7 C -0.143 4.143 8 C 0.399 3.601 9 O -0.473 6.473 10 C 0.001 3.999 11 H 0.046 0.954 12 C -0.118 4.118 13 C -0.536 4.536 14 H 0.046 0.954 15 C 0.023 3.977 16 N -0.908 5.908 17 Si 0.953 3.047 18 H -0.273 1.273 19 H -0.275 1.275 20 H -0.277 1.277 21 H 0.075 0.925 22 H 0.096 0.904 23 H 0.063 0.937 24 H 0.191 0.809 25 H 0.192 0.808 26 H 0.150 0.850 27 H 0.020 0.980 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 11.508 1.542 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.069 4.069 4 N -0.189 5.189 5 C -0.074 4.074 6 C -0.142 4.142 7 C -0.152 4.152 8 C 0.278 3.722 9 O -0.348 6.348 10 C -0.017 4.017 11 H 0.064 0.936 12 C -0.176 4.176 13 C -0.574 4.574 14 H 0.064 0.936 15 C -0.177 4.177 16 N -0.546 5.546 17 Si 0.779 3.221 18 H -0.199 1.199 19 H -0.200 1.200 20 H -0.202 1.202 21 H 0.094 0.906 22 H 0.114 0.886 23 H 0.082 0.918 24 H 0.208 0.792 25 H 0.209 0.791 26 H 0.168 0.832 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.074 12.115 1.597 12.267 hybrid contribution -0.854 -1.908 -0.424 2.133 sum 0.219 10.207 1.174 10.277 Atomic orbital electron populations 1.20916 0.88969 1.03778 1.03187 1.21529 0.98817 0.93020 0.96578 1.23108 0.89763 0.97719 0.96263 1.67591 1.08649 1.32197 1.10416 1.23180 1.01845 0.86409 0.95943 1.22743 0.93506 1.01274 0.96707 1.21256 0.95800 0.95194 1.02934 1.23260 0.88767 0.90673 0.69462 1.90200 1.17897 1.89756 1.36993 1.19124 0.96142 0.90325 0.96151 0.93599 1.21517 0.99345 1.02146 0.94599 1.21212 0.99940 0.97414 1.38815 0.93562 1.25585 0.96265 0.99822 0.96041 1.69922 1.15754 1.21860 1.47103 0.85681 0.78878 0.78481 0.79070 1.19866 1.19955 1.20228 0.90648 0.88571 0.91789 0.79207 0.79077 0.83244 0.96037 0.90583 0.93706 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.18 8.84 71.24 0.63 -2.55 16 2 C -0.10 -3.01 5.94 -19.45 -0.12 -3.13 16 3 C 0.09 2.29 10.83 84.68 0.92 3.20 16 4 N -0.48 -13.06 10.33 -196.05 -2.03 -15.08 16 5 C 0.08 2.13 11.17 84.66 0.95 3.07 16 6 C -0.12 -3.82 9.41 22.69 0.21 -3.61 16 7 C -0.14 -5.21 5.90 -19.94 -0.12 -5.33 16 8 C 0.40 17.89 6.12 28.14 0.17 18.06 16 9 O -0.47 -22.89 13.11 -1.66 -0.02 -22.91 16 10 C 0.00 0.07 2.01 -12.28 -0.02 0.05 16 11 H 0.05 2.29 6.80 -2.39 -0.02 2.27 16 12 C -0.12 -5.51 8.95 71.98 0.64 -4.87 16 13 C -0.54 -30.15 8.32 25.60 0.21 -29.94 16 14 H 0.05 2.72 7.14 -2.91 -0.02 2.70 16 15 C 0.02 1.25 5.30 84.65 0.45 1.69 16 16 N -0.91 -50.10 11.32 21.45 0.24 -49.86 16 17 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.10 1.96 8.06 -2.38 -0.02 1.94 16 23 H 0.06 2.24 5.97 -2.39 -0.01 2.22 16 24 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 25 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 26 H 0.15 4.58 6.67 -2.91 -0.02 4.56 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 3.85 6.07 -2.39 -0.01 3.84 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -63.19 257.97 5.29 -57.90 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.14 Total: 7.48 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 3.93 Total: -23.34 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -1.78 Total: -64.94 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.02 Total: -22.91 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -63.19 5.29 -57.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306954606.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.485 kcal (2) G-P(sol) polarization free energy of solvation -63.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds