Wall clock time and date at job start Mon Mar 30 2020 03:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47536 * 2 1 4 4 O 1.21328 * 119.99739 * 0.02562 * 3 2 1 5 5 C 1.46638 * 120.00346 * 179.97438 * 3 2 1 6 6 C 1.40126 * 120.13140 * 5.65803 * 5 3 2 7 7 C 1.38224 * 120.44839 * 180.02562 * 6 5 3 8 8 C 1.37848 * 120.72601 * 359.69309 * 7 6 5 9 9 C 1.40583 * 120.23715 * 0.56368 * 8 7 6 10 10 C 1.41020 * 120.22239 * 179.73979 * 9 8 7 11 11 H 1.08005 * 120.00033 * 204.77146 * 10 9 8 12 12 C 1.39962 * 120.00331 * 24.77501 * 10 9 8 13 13 N 1.30860 * 119.99627 * 16.18535 * 12 10 9 14 14 Si 1.86795 * 120.00074 * 196.18897 * 12 10 9 15 15 H 1.48503 * 109.47412 * 59.99622 * 14 12 10 16 16 H 1.48497 * 109.47351 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47233 * 299.99819 * 14 12 10 18 18 C 1.40470 * 120.12919 * 185.63385 * 5 3 2 19 19 N 1.37733 * 120.35202 * 0.02562 * 18 5 3 20 20 H 1.08997 * 109.47211 * 300.00163 * 1 2 3 21 21 H 1.09003 * 109.47176 * 59.99902 * 1 2 3 22 22 H 1.08999 * 109.47268 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47118 * 240.00227 * 2 1 3 24 24 H 1.09003 * 109.47176 * 120.00098 * 2 1 3 25 25 H 1.08000 * 119.77406 * 359.97397 * 6 5 3 26 26 H 1.08005 * 119.63820 * 180.02562 * 7 6 5 27 27 H 1.08000 * 119.88067 * 180.28149 * 8 7 6 28 28 H 0.97003 * 119.99424 * 179.97438 * 13 12 10 29 29 H 0.96992 * 119.99695 * 203.36844 * 19 18 5 30 30 H 0.97000 * 119.99347 * 23.37173 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2440 2.3429 0.0005 5 6 3.4741 1.6887 0.0006 6 6 4.3860 0.6315 -0.1184 7 6 5.7464 0.8765 -0.1181 8 6 6.2304 2.1625 -0.0074 9 6 5.3421 3.2448 0.1190 10 6 5.8377 4.5597 0.2377 11 1 5.2413 5.3201 0.7198 12 6 7.1026 4.8793 -0.2693 13 7 7.6898 4.0746 -1.1178 14 14 7.9523 6.4545 0.2654 15 1 8.1500 6.4354 1.7371 16 1 9.2710 6.5592 -0.4094 17 1 7.1117 7.6211 -0.1060 18 6 3.9463 3.0062 0.1198 19 7 3.0611 4.0549 0.2375 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 4.0236 -0.3817 -0.2101 26 1 6.4377 0.0518 -0.2109 27 1 7.2959 2.3387 -0.0132 28 1 8.5662 4.2963 -1.4694 29 1 3.3341 4.9506 -0.0153 30 1 2.1648 3.8975 0.5733 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306985552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:19 Heat of formation + Delta-G solvation = -29.258467 kcal Electronic energy + Delta-G solvation = -14386.873746 eV Core-core repulsion = 11953.281711 eV Total energy + Delta-G solvation = -2433.592035 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.17563 -37.08768 -33.64783 -33.44407 -32.19106 -29.84126 -27.90515 -25.20226 -24.32297 -21.81033 -20.15878 -19.05025 -17.12706 -16.02249 -15.57376 -15.06569 -14.89192 -14.79230 -14.28549 -13.18875 -12.81733 -12.70212 -12.46908 -11.94909 -11.77507 -11.50442 -11.23049 -11.15595 -10.93423 -10.83846 -10.46067 -10.29663 -9.63901 -9.26008 -9.16546 -8.57698 -7.49495 -6.80052 -6.42652 -4.22105 1.99694 2.87335 3.07142 3.09627 3.20607 3.60156 3.94447 4.65591 4.83451 5.24527 5.41898 5.42899 5.64130 5.73573 6.03788 6.18749 6.21684 6.40261 6.42233 6.52355 6.92102 6.99191 7.19264 7.36550 7.48932 7.83361 7.99548 8.13674 8.38369 8.51251 8.76474 8.80252 9.00601 9.13867 10.23596 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.049799 B = 0.007903 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.126627 B = 3542.234483 C = 4018.678373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.166 4.166 3 C 0.401 3.599 4 O -0.498 6.498 5 C -0.245 4.245 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.130 4.130 9 C 0.045 3.955 10 C -0.461 4.461 11 H 0.075 0.925 12 C 0.074 3.926 13 N -0.800 5.800 14 Si 0.908 3.092 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.267 1.267 18 C 0.201 3.799 19 N -0.861 5.861 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.123 0.877 28 H 0.279 0.721 29 H 0.389 0.611 30 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 -3.953 1.682 6.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.204 4.204 3 C 0.286 3.714 4 O -0.378 6.378 5 C -0.251 4.251 6 C -0.179 4.179 7 C -0.168 4.168 8 C -0.152 4.152 9 C 0.041 3.959 10 C -0.491 4.491 11 H 0.093 0.907 12 C -0.143 4.143 13 N -0.426 5.426 14 Si 0.733 3.267 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.192 1.192 18 C 0.093 3.907 19 N -0.406 5.406 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.141 0.859 28 H 0.090 0.910 29 H 0.217 0.783 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.773 -3.541 1.534 6.138 hybrid contribution 0.480 0.825 0.118 0.962 sum -4.293 -2.716 1.652 5.342 Atomic orbital electron populations 1.21561 0.94779 1.00746 1.02614 1.21904 0.96970 0.97526 1.03989 1.22256 0.88756 0.89945 0.70453 1.90228 1.59006 1.47374 1.41234 1.19439 0.92763 0.93618 1.19315 1.20371 0.92871 0.95686 1.08930 1.20498 0.94191 0.96528 1.05611 1.21239 0.99931 0.90444 1.03547 1.17417 0.88316 0.94384 0.95828 1.19195 1.00809 0.95361 1.33767 0.90737 1.25799 0.97223 0.98357 0.92903 1.69802 1.14747 1.36620 1.21477 0.86373 0.78613 0.81810 0.79905 1.19023 1.20439 1.19223 1.18260 0.90172 0.86534 0.95693 1.42305 1.15919 1.08573 1.73773 0.92544 0.92511 0.92908 0.89105 0.89109 0.88673 0.89185 0.85932 0.90975 0.78251 0.77128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.20 37.15 0.34 -1.53 16 2 C -0.17 -2.49 5.09 -27.89 -0.14 -2.64 16 3 C 0.40 7.91 7.08 -30.92 -0.22 7.69 16 4 O -0.50 -10.50 13.43 5.52 0.07 -10.42 16 5 C -0.24 -5.48 5.88 -104.96 -0.62 -6.10 16 6 C -0.16 -3.36 9.46 -38.88 -0.37 -3.72 16 7 C -0.15 -3.36 9.99 -39.73 -0.40 -3.76 16 8 C -0.13 -3.30 8.67 -38.84 -0.34 -3.63 16 9 C 0.05 1.18 5.59 -106.67 -0.60 0.58 16 10 C -0.46 -11.87 8.39 -37.88 -0.32 -12.18 16 11 H 0.07 1.83 7.07 -52.48 -0.37 1.46 16 12 C 0.07 1.82 5.17 -17.32 -0.09 1.73 16 13 N -0.80 -20.42 10.87 55.55 0.60 -19.81 16 14 Si 0.91 18.55 29.59 -169.99 -5.03 13.52 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 18 C 0.20 4.89 6.80 -83.09 -0.56 4.32 16 19 N -0.86 -18.80 8.24 32.88 0.27 -18.53 16 20 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 21 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.09 1.26 7.90 -51.93 -0.41 0.85 16 24 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.10 1.70 6.96 -52.49 -0.37 1.33 16 26 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 27 H 0.12 3.21 6.09 -52.49 -0.32 2.89 16 28 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 29 H 0.39 8.12 7.57 -40.82 -0.31 7.81 16 30 H 0.39 8.22 6.04 -40.82 -0.25 7.98 16 LS Contribution 255.24 15.07 3.85 3.85 Total: -1.00 -27.44 255.24 -6.81 -34.24 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -3.27 Total: 16.39 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -3.31 Total: -19.24 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.87 Total: -38.34 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.44 -6.81 -34.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306985552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.984 kcal (2) G-P(sol) polarization free energy of solvation -27.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds