Wall clock time and date at job start Mon Mar 30 2020 03:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47142 * 2 1 4 4 O 1.21404 * 119.99673 * 4.64304 * 3 2 1 5 5 C 1.41751 * 120.00118 * 184.63991 * 3 2 1 6 6 C 1.40497 * 120.64502 * 266.20959 * 5 3 2 7 7 N 1.38592 * 120.09736 * 359.97142 * 6 5 3 8 8 C 1.39164 * 119.80277 * 179.70168 * 6 5 3 9 9 C 1.38285 * 121.20693 * 0.29050 * 8 6 5 10 10 C 1.37775 * 121.36139 * 359.97438 * 9 8 6 11 11 C 1.40694 * 120.07580 * 359.97438 * 10 9 8 12 12 C 1.40674 * 120.57806 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99826 * 208.06129 * 12 11 10 14 14 C 1.40368 * 120.00181 * 28.06265 * 12 11 10 15 15 N 1.30574 * 120.00259 * 13.07422 * 14 12 11 16 16 Si 1.86802 * 120.00086 * 193.07710 * 14 12 11 17 17 H 1.48504 * 109.46888 * 59.99519 * 16 14 12 18 18 H 1.48498 * 109.47416 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46995 * 300.00189 * 16 14 12 20 20 H 1.09003 * 109.47031 * 299.99632 * 1 2 3 21 21 H 1.08998 * 109.47284 * 59.99974 * 1 2 3 22 22 H 1.09003 * 109.46854 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47026 * 239.99459 * 2 1 3 24 24 H 1.09009 * 109.46914 * 119.99712 * 2 1 3 25 25 H 0.97007 * 119.99891 * 174.35195 * 7 6 5 26 26 H 0.96996 * 120.00270 * 354.06874 * 7 6 5 27 27 H 1.08001 * 119.40247 * 180.27260 * 8 6 5 28 28 H 1.07996 * 119.31814 * 180.02562 * 9 8 6 29 29 H 1.07999 * 119.96211 * 179.97438 * 10 9 8 30 30 H 0.97002 * 120.00749 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2466 2.3424 0.0851 5 6 3.4222 1.6812 -0.0993 6 6 4.2019 1.8587 1.0559 7 7 3.6152 1.7809 2.3091 8 6 5.5660 2.1074 0.9382 9 6 6.1750 2.1901 -0.3006 10 6 5.4563 2.0293 -1.4650 11 6 4.0737 1.7747 -1.4108 12 6 3.3298 1.6082 -2.5930 13 1 2.2799 1.8610 -2.6105 14 6 3.9519 1.1136 -3.7500 15 7 5.1371 0.5711 -3.6729 16 14 3.0843 1.2315 -5.4001 17 1 2.8170 2.6573 -5.7180 18 1 3.9466 0.6426 -6.4560 19 1 1.7998 0.4890 -5.3381 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 4.1665 1.8218 3.1062 26 1 2.6528 1.6897 2.3893 27 1 6.1600 2.2385 1.8306 28 1 7.2360 2.3839 -0.3564 29 1 5.9549 2.0989 -2.4205 30 1 5.5673 0.2296 -4.4725 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307021118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:22 Heat of formation + Delta-G solvation = -32.566464 kcal Electronic energy + Delta-G solvation = -14632.387735 eV Core-core repulsion = 12198.652255 eV Total energy + Delta-G solvation = -2433.735480 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.99589 -36.81295 -34.51582 -32.64653 -32.09375 -30.02759 -27.73356 -25.59443 -24.14845 -21.39057 -20.71044 -18.44249 -17.43285 -16.18639 -15.77521 -15.13182 -14.78348 -14.36124 -14.28069 -13.12061 -12.92537 -12.77603 -11.99464 -11.96005 -11.67590 -11.40775 -11.25261 -11.15555 -11.05190 -10.60627 -10.54506 -10.03921 -9.75165 -9.54110 -9.07112 -8.52800 -7.37886 -6.89055 -6.40799 -4.51037 2.65221 2.97043 3.01329 3.02206 3.06445 3.30203 3.84910 4.56643 4.75951 5.21723 5.60658 5.67667 5.68325 6.05774 6.26320 6.30566 6.47451 6.58246 6.65963 6.88947 6.94846 6.95391 7.11643 7.28382 7.59593 7.80012 7.99401 8.10605 8.34228 8.56564 8.56738 8.66989 8.75247 8.92616 10.04437 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.013001 C = 0.009007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.642358 B = 2153.225281 C = 3108.027052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.174 4.174 3 C 0.455 3.545 4 O -0.488 6.488 5 C -0.364 4.364 6 C 0.266 3.734 7 N -0.888 5.888 8 C -0.313 4.313 9 C -0.052 4.052 10 C -0.209 4.209 11 C 0.180 3.820 12 C -0.456 4.456 13 H 0.078 0.922 14 C 0.080 3.920 15 N -0.778 5.778 16 Si 0.910 3.090 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.263 1.263 20 H 0.052 0.948 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.100 0.900 24 H 0.084 0.916 25 H 0.388 0.612 26 H 0.385 0.615 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 -2.385 3.340 4.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.212 4.212 3 C 0.334 3.666 4 O -0.365 6.365 5 C -0.371 4.371 6 C 0.163 3.837 7 N -0.427 5.427 8 C -0.337 4.337 9 C -0.071 4.071 10 C -0.229 4.229 11 C 0.176 3.824 12 C -0.484 4.484 13 H 0.096 0.904 14 C -0.141 4.141 15 N -0.402 5.402 16 Si 0.734 3.266 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.187 1.187 20 H 0.071 0.929 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.118 0.882 24 H 0.102 0.898 25 H 0.215 0.785 26 H 0.211 0.789 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.137 0.863 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.346 -2.035 3.159 4.430 hybrid contribution -0.249 -0.181 -0.418 0.519 sum -2.595 -2.215 2.741 4.377 Atomic orbital electron populations 1.21580 0.95256 1.00550 1.02332 1.22090 0.96439 0.98419 1.04241 1.20635 0.88898 0.89448 0.67576 1.90436 1.59999 1.48417 1.37610 1.19518 0.94712 1.29422 0.93433 1.17201 0.91621 0.91583 0.83250 1.42166 1.09041 1.86289 1.05237 1.19643 0.92616 1.24765 0.96629 1.20415 0.97208 0.96833 0.92641 1.21080 0.94637 1.10349 0.96877 1.18130 0.91493 0.84090 0.88659 1.19531 0.97496 1.37395 0.94008 0.90353 1.25978 0.94605 0.92393 1.01097 1.69704 1.13517 1.25420 1.31534 0.86326 0.80140 0.80082 0.80095 1.18553 1.20075 1.18727 0.92900 0.92485 0.93098 0.88224 0.89773 0.78539 0.78865 0.89447 0.89411 0.86343 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.21 37.16 0.34 -1.93 16 2 C -0.17 -3.26 6.30 -27.88 -0.18 -3.43 16 3 C 0.46 10.32 4.07 -32.97 -0.13 10.18 16 4 O -0.49 -11.95 16.72 5.45 0.09 -11.86 16 5 C -0.36 -8.95 5.55 -104.27 -0.58 -9.53 16 6 C 0.27 5.99 6.76 -83.61 -0.57 5.43 16 7 N -0.89 -15.94 8.95 32.56 0.29 -15.65 16 8 C -0.31 -7.01 9.83 -39.22 -0.39 -7.40 16 9 C -0.05 -1.21 9.95 -39.73 -0.40 -1.60 16 10 C -0.21 -5.38 8.67 -38.82 -0.34 -5.72 16 11 C 0.18 4.77 5.71 -104.62 -0.60 4.18 16 12 C -0.46 -11.94 8.54 -37.86 -0.32 -12.26 16 13 H 0.08 2.06 7.45 -52.49 -0.39 1.67 16 14 C 0.08 1.94 5.22 -17.29 -0.09 1.85 16 15 N -0.78 -19.24 10.93 55.57 0.61 -18.63 16 16 Si 0.91 18.30 29.58 -169.99 -5.03 13.27 16 17 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 19 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 20 H 0.05 0.83 8.05 -51.93 -0.42 0.41 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 24 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 25 H 0.39 5.79 8.83 -40.82 -0.36 5.43 16 26 H 0.38 6.62 7.72 -40.82 -0.32 6.30 16 27 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.12 3.11 6.27 -52.49 -0.33 2.78 16 30 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 LS Contribution 262.62 15.07 3.96 3.96 Total: -1.00 -28.34 262.62 -6.80 -35.14 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -3.48 Total: 14.01 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -3.24 Total: -20.25 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.90 Total: -34.28 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.34 -6.80 -35.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307021118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.578 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds