Wall clock time and date at job start Mon Mar 30 2020 03:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47142 * 2 1 4 4 O 1.21404 * 119.99673 * 4.64304 * 3 2 1 5 5 C 1.41751 * 120.00118 * 184.63991 * 3 2 1 6 6 C 1.40497 * 120.64502 * 266.20959 * 5 3 2 7 7 N 1.38592 * 120.09736 * 359.97142 * 6 5 3 8 8 C 1.39164 * 119.80277 * 179.70168 * 6 5 3 9 9 C 1.38285 * 121.20693 * 0.29050 * 8 6 5 10 10 C 1.37775 * 121.36139 * 359.97438 * 9 8 6 11 11 C 1.40694 * 120.07580 * 359.97438 * 10 9 8 12 12 C 1.40674 * 120.57806 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99826 * 208.06129 * 12 11 10 14 14 C 1.40368 * 120.00181 * 28.06265 * 12 11 10 15 15 N 1.30574 * 120.00259 * 13.07422 * 14 12 11 16 16 Si 1.86802 * 120.00086 * 193.07710 * 14 12 11 17 17 H 1.48504 * 109.46888 * 59.99519 * 16 14 12 18 18 H 1.48498 * 109.47416 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46995 * 300.00189 * 16 14 12 20 20 H 1.09003 * 109.47031 * 299.99632 * 1 2 3 21 21 H 1.08998 * 109.47284 * 59.99974 * 1 2 3 22 22 H 1.09003 * 109.46854 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47026 * 239.99459 * 2 1 3 24 24 H 1.09009 * 109.46914 * 119.99712 * 2 1 3 25 25 H 0.97007 * 119.99891 * 174.35195 * 7 6 5 26 26 H 0.96996 * 120.00270 * 354.06874 * 7 6 5 27 27 H 1.08001 * 119.40247 * 180.27260 * 8 6 5 28 28 H 1.07996 * 119.31814 * 180.02562 * 9 8 6 29 29 H 1.07999 * 119.96211 * 179.97438 * 10 9 8 30 30 H 0.97002 * 120.00749 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2466 2.3424 0.0851 5 6 3.4222 1.6812 -0.0993 6 6 4.2019 1.8587 1.0559 7 7 3.6152 1.7809 2.3091 8 6 5.5660 2.1074 0.9382 9 6 6.1750 2.1901 -0.3006 10 6 5.4563 2.0293 -1.4650 11 6 4.0737 1.7747 -1.4108 12 6 3.3298 1.6082 -2.5930 13 1 2.2799 1.8610 -2.6105 14 6 3.9519 1.1136 -3.7500 15 7 5.1371 0.5711 -3.6729 16 14 3.0843 1.2315 -5.4001 17 1 2.8170 2.6573 -5.7180 18 1 3.9466 0.6426 -6.4560 19 1 1.7998 0.4890 -5.3381 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 4.1665 1.8218 3.1062 26 1 2.6528 1.6897 2.3893 27 1 6.1600 2.2385 1.8306 28 1 7.2360 2.3839 -0.3564 29 1 5.9549 2.0989 -2.4205 30 1 5.5673 0.2296 -4.4725 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307021118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:22 Heat of formation + Delta-G solvation = -49.676078 kcal Electronic energy + Delta-G solvation = -14633.129664 eV Core-core repulsion = 12198.652255 eV Total energy + Delta-G solvation = -2434.477409 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77067 -38.60891 -36.29616 -34.39890 -33.61650 -31.83420 -29.49165 -27.42551 -25.76877 -23.07778 -22.51475 -20.18738 -19.26119 -17.82676 -17.56254 -16.89121 -16.44545 -16.05858 -15.86803 -14.85085 -14.65452 -14.49467 -13.69869 -13.61428 -13.32091 -13.00490 -12.98332 -12.82931 -12.56063 -12.20367 -11.98710 -11.88702 -11.58121 -11.31333 -10.84746 -10.30616 -9.25392 -8.70517 -8.14197 -6.44188 0.83949 1.21790 1.25617 1.36995 1.47497 1.57448 2.17506 2.72733 3.22566 3.54936 3.78017 4.25280 4.28410 4.52519 4.64189 4.82622 4.99284 5.02150 5.12436 5.17547 5.18832 5.26216 5.31587 5.50847 5.78742 5.95466 6.14914 6.22311 6.53212 6.76181 6.81861 6.86620 7.07488 7.17214 8.25220 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.013001 C = 0.009007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.642358 B = 2153.225281 C = 3108.027052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.168 4.168 3 C 0.454 3.546 4 O -0.514 6.514 5 C -0.391 4.391 6 C 0.265 3.735 7 N -0.869 5.869 8 C -0.315 4.315 9 C -0.053 4.053 10 C -0.240 4.240 11 C 0.150 3.850 12 C -0.487 4.487 13 H 0.063 0.937 14 C 0.046 3.954 15 N -0.802 5.802 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.258 1.258 19 H -0.259 1.259 20 H 0.057 0.943 21 H 0.040 0.960 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.406 0.594 26 H 0.391 0.609 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 -3.106 4.139 5.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.205 4.205 3 C 0.335 3.665 4 O -0.393 6.393 5 C -0.398 4.398 6 C 0.160 3.840 7 N -0.409 5.409 8 C -0.338 4.338 9 C -0.072 4.072 10 C -0.261 4.261 11 C 0.147 3.853 12 C -0.516 4.516 13 H 0.081 0.919 14 C -0.173 4.173 15 N -0.426 5.426 16 Si 0.795 3.205 17 H -0.189 1.189 18 H -0.182 1.182 19 H -0.183 1.183 20 H 0.077 0.923 21 H 0.059 0.941 22 H 0.102 0.898 23 H 0.107 0.893 24 H 0.127 0.873 25 H 0.236 0.764 26 H 0.218 0.782 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.568 -2.769 4.010 5.508 hybrid contribution -0.108 0.064 -0.521 0.536 sum -2.677 -2.705 3.490 5.163 Atomic orbital electron populations 1.21563 0.93224 1.02555 1.01814 1.22047 0.98195 0.95549 1.04752 1.21002 0.88120 0.90975 0.66427 1.90412 1.60231 1.49606 1.39076 1.19905 0.96054 1.30136 0.93684 1.17365 0.91856 0.90493 0.84320 1.42034 1.09626 1.84895 1.04392 1.20021 0.92928 1.23509 0.97379 1.20726 0.98468 0.95615 0.92360 1.21048 0.94862 1.12944 0.97246 1.18479 0.92243 0.84811 0.89760 1.19600 0.97018 1.39450 0.95487 0.91853 1.26698 0.95250 0.91457 1.03877 1.69732 1.14500 1.25482 1.32895 0.85360 0.79326 0.79788 0.76028 1.18934 1.18207 1.18268 0.92343 0.94114 0.89785 0.89314 0.87334 0.76412 0.78164 0.86316 0.86899 0.87886 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.21 71.98 0.66 -3.47 16 2 C -0.17 -6.10 6.30 29.85 0.19 -5.91 16 3 C 0.45 20.54 4.07 26.55 0.11 20.64 16 4 O -0.51 -25.34 16.72 -3.41 -0.06 -25.40 16 5 C -0.39 -19.30 5.55 -19.64 -0.11 -19.41 16 6 C 0.26 11.55 6.76 38.85 0.26 11.81 16 7 N -0.87 -29.03 8.95 -50.89 -0.46 -29.49 16 8 C -0.32 -13.50 9.83 22.50 0.22 -13.28 16 9 C -0.05 -2.42 9.95 22.17 0.22 -2.20 16 10 C -0.24 -12.65 8.67 22.76 0.20 -12.46 16 11 C 0.15 8.20 5.71 -19.86 -0.11 8.09 16 12 C -0.49 -26.40 8.54 23.38 0.20 -26.20 16 13 H 0.06 3.49 7.45 -2.91 -0.02 3.47 16 14 C 0.05 2.25 5.22 85.40 0.45 2.70 16 15 N -0.80 -40.34 10.93 21.90 0.24 -40.10 16 16 Si 0.97 37.75 29.58 68.60 2.03 39.78 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 18 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 20 H 0.06 1.72 8.05 -2.39 -0.02 1.70 16 21 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 24 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 25 H 0.41 10.74 8.83 -92.70 -0.82 9.93 16 26 H 0.39 12.53 7.72 -92.71 -0.72 11.81 16 27 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.10 5.61 6.27 -2.91 -0.02 5.60 16 30 H 0.29 13.22 8.29 -92.71 -0.77 12.46 16 Total: -1.00 -61.87 262.62 3.67 -58.20 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: -0.37 Total: 36.70 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 2.28 Total: -39.69 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -0.22 Total: -69.59 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.06 Total: -25.40 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -61.87 3.67 -58.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307021118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.524 kcal (2) G-P(sol) polarization free energy of solvation -61.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds