Wall clock time and date at job start Mon Mar 30 2020 03:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47316 * 2 1 4 4 O 1.21247 * 119.99624 * 359.97438 * 3 2 1 5 5 C 1.47241 * 120.00291 * 179.97438 * 3 2 1 6 6 C 1.40064 * 120.01455 * 359.97438 * 5 3 2 7 7 C 1.38970 * 120.24827 * 180.02562 * 6 5 3 8 8 N 1.39728 * 119.85353 * 179.97438 * 7 6 5 9 9 C 1.38437 * 120.28671 * 359.96783 * 7 6 5 10 10 C 1.40633 * 120.03122 * 0.02562 * 9 7 6 11 11 C 1.41460 * 120.12565 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99840 * 24.49631 * 11 10 9 13 13 C 1.39914 * 120.00347 * 204.49305 * 11 10 9 14 14 N 1.30842 * 119.99671 * 17.89128 * 13 11 10 15 15 Si 1.86796 * 120.00418 * 197.88968 * 13 11 10 16 16 H 1.48500 * 109.46824 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47376 * 120.00081 * 15 13 11 18 18 H 1.48507 * 109.47136 * 240.00420 * 15 13 11 19 19 C 1.39296 * 120.01580 * 180.02562 * 5 3 2 20 20 H 1.09000 * 109.47170 * 60.00326 * 1 2 3 21 21 H 1.09002 * 109.47316 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47503 * 300.00091 * 1 2 3 23 23 H 1.09004 * 109.47088 * 239.99603 * 2 1 3 24 24 H 1.09005 * 109.46934 * 120.00083 * 2 1 3 25 25 H 1.07998 * 119.88117 * 0.02562 * 6 5 3 26 26 H 0.96991 * 120.00583 * 359.97438 * 8 7 6 27 27 H 0.97000 * 119.99678 * 179.97438 * 8 7 6 28 28 H 1.07998 * 119.98122 * 179.97438 * 9 7 6 29 29 H 0.97004 * 119.99807 * 179.97438 * 14 13 11 30 30 H 1.08000 * 120.14751 * 359.69672 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2444 2.3423 -0.0005 5 6 3.4800 1.6899 0.0006 6 6 4.3904 0.6255 0.0017 7 6 5.7577 0.8739 0.0027 8 7 6.6587 -0.1941 0.0044 9 6 6.2310 2.1748 0.0021 10 6 5.3275 3.2525 0.0008 11 6 5.8089 4.5827 -0.0004 12 1 6.7931 4.8004 -0.3882 13 6 5.0101 5.6163 0.5008 14 7 3.9930 5.3398 1.2761 15 14 5.3956 7.3909 0.0631 16 1 6.5880 7.4348 -0.8209 17 1 4.2341 7.9905 -0.6414 18 1 5.6717 8.1581 1.3044 19 6 3.9446 3.0030 0.0011 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 4.0286 -0.3921 0.0017 26 1 6.3294 -1.1065 0.0051 27 1 7.6135 -0.0232 0.0047 28 1 7.2946 2.3622 0.0033 29 1 3.4394 6.0565 1.6239 30 1 3.2451 3.8259 -0.0038 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307022575.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:25 Heat of formation + Delta-G solvation = -34.823309 kcal Electronic energy + Delta-G solvation = -14226.118501 eV Core-core repulsion = 11792.285156 eV Total energy + Delta-G solvation = -2433.833345 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.89683 -37.23335 -34.36711 -32.66721 -32.27216 -30.10262 -27.33582 -25.50266 -24.51593 -21.61681 -20.49952 -18.74279 -17.23716 -15.94436 -15.66477 -14.82412 -14.73025 -14.58016 -14.46048 -13.54780 -12.86675 -12.62849 -12.57476 -11.87345 -11.79750 -11.47824 -11.29004 -11.11401 -10.78291 -10.76366 -10.51615 -10.00542 -9.89687 -9.48817 -8.97107 -8.68018 -7.55616 -6.78767 -6.40345 -4.38767 2.00733 2.88478 3.09319 3.14342 3.28709 3.64496 3.93441 4.65698 4.76062 4.90947 5.43353 5.47528 5.69733 5.77590 6.07820 6.27002 6.29970 6.38207 6.46426 6.82690 6.97040 7.01381 7.16947 7.23415 7.65015 7.71411 7.88383 8.13179 8.37610 8.50940 8.62697 8.69991 8.87679 8.94635 10.17145 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.024473 B = 0.009959 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.855588 B = 2810.955654 C = 3863.855501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.167 4.167 3 C 0.396 3.604 4 O -0.470 6.470 5 C -0.129 4.129 6 C -0.273 4.273 7 C 0.219 3.781 8 N -0.896 5.896 9 C -0.275 4.275 10 C 0.125 3.875 11 C -0.459 4.459 12 H 0.080 0.920 13 C 0.074 3.926 14 N -0.783 5.783 15 Si 0.909 3.091 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.274 1.274 19 C -0.122 4.122 20 H 0.056 0.944 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.384 0.616 27 H 0.386 0.614 28 H 0.093 0.907 29 H 0.283 0.717 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 -6.988 -1.553 7.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.205 4.205 3 C 0.276 3.724 4 O -0.347 6.347 5 C -0.131 4.131 6 C -0.297 4.297 7 C 0.118 3.882 8 N -0.437 5.437 9 C -0.299 4.299 10 C 0.122 3.878 11 C -0.488 4.488 12 H 0.098 0.902 13 C -0.145 4.145 14 N -0.407 5.407 15 Si 0.733 3.267 16 H -0.184 1.184 17 H -0.196 1.196 18 H -0.199 1.199 19 C -0.143 4.143 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.210 0.790 27 H 0.212 0.788 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.088 -6.317 -1.403 6.562 hybrid contribution 0.546 0.367 -0.034 0.659 sum -0.542 -5.950 -1.437 6.145 Atomic orbital electron populations 1.21581 0.94747 1.00764 1.02778 1.21939 0.97027 0.97535 1.03966 1.22614 0.89273 0.89923 0.70622 1.90434 1.58770 1.47966 1.37556 1.19791 0.92235 0.94762 1.06332 1.19893 0.90856 0.96306 1.22651 1.17365 0.88978 0.87424 0.94409 1.42330 1.07030 1.05941 1.88356 1.20538 0.97886 0.90529 1.20946 1.17352 0.90879 0.92469 0.87076 1.19608 1.02181 0.91123 1.35880 0.90175 1.25961 0.93936 1.01932 0.92675 1.69831 1.13842 1.35453 1.21575 0.86255 0.79711 0.81449 0.79308 1.18352 1.19575 1.19941 1.21668 0.96186 0.94256 1.02149 0.92458 0.92867 0.92406 0.89077 0.89058 0.88750 0.79038 0.78751 0.88886 0.90600 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.20 37.16 0.34 -1.68 16 2 C -0.17 -2.66 5.02 -27.89 -0.14 -2.80 16 3 C 0.40 8.51 7.12 -30.65 -0.22 8.29 16 4 O -0.47 -11.42 15.96 5.59 0.09 -11.33 16 5 C -0.13 -3.08 5.86 -105.16 -0.62 -3.70 16 6 C -0.27 -5.86 9.32 -38.63 -0.36 -6.22 16 7 C 0.22 4.71 6.73 -83.91 -0.57 4.14 16 8 N -0.90 -14.68 9.09 32.34 0.29 -14.39 16 9 C -0.27 -6.64 9.61 -38.60 -0.37 -7.01 16 10 C 0.13 3.37 5.57 -106.91 -0.60 2.77 16 11 C -0.46 -12.21 9.05 -37.73 -0.34 -12.55 16 12 H 0.08 2.03 7.91 -52.48 -0.41 1.62 16 13 C 0.07 1.89 5.13 -17.35 -0.09 1.80 16 14 N -0.78 -20.88 10.96 55.55 0.61 -20.27 16 15 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 16 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 C -0.12 -3.29 8.23 -38.33 -0.32 -3.61 16 20 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 23 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 24 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 25 H 0.09 1.72 7.02 -52.49 -0.37 1.35 16 26 H 0.38 5.27 8.84 -40.82 -0.36 4.91 16 27 H 0.39 5.62 8.83 -40.82 -0.36 5.25 16 28 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 29 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 30 H 0.13 3.75 5.73 -52.49 -0.30 3.45 16 LS Contribution 262.95 15.07 3.96 3.96 Total: -1.00 -29.50 262.95 -6.81 -36.32 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -3.47 Total: 12.39 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -3.27 Total: -20.56 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.90 Total: -34.66 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.50 -6.81 -36.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307022575.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.492 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds