Wall clock time and date at job start Mon Mar 30 2020 03:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47240 * 2 1 4 4 O 1.21301 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.46867 * 120.00187 * 180.02562 * 3 2 1 6 6 C 1.40538 * 119.95083 * 0.27220 * 5 3 2 7 7 C 1.37575 * 120.46154 * 180.27980 * 6 5 3 8 8 C 1.39030 * 120.36167 * 359.44921 * 7 6 5 9 9 N 1.38135 * 120.05362 * 180.25302 * 8 7 6 10 10 C 1.41720 * 119.88505 * 0.27712 * 8 7 6 11 11 C 1.41152 * 120.22392 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00103 * 333.58345 * 11 10 8 13 13 C 1.39916 * 120.00047 * 153.57865 * 11 10 8 14 14 N 1.30878 * 120.00123 * 343.98572 * 13 11 10 15 15 Si 1.86800 * 120.00044 * 163.97895 * 13 11 10 16 16 H 1.48497 * 109.47003 * 60.00584 * 15 13 11 17 17 H 1.48499 * 109.47039 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47370 * 300.00499 * 15 13 11 19 19 C 1.39360 * 119.95239 * 180.02562 * 5 3 2 20 20 H 1.09008 * 109.47194 * 299.99674 * 1 2 3 21 21 H 1.08996 * 109.47462 * 59.99547 * 1 2 3 22 22 H 1.08994 * 109.47430 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46892 * 240.00618 * 2 1 3 24 24 H 1.08997 * 109.47806 * 120.00035 * 2 1 3 25 25 H 1.08000 * 119.76776 * 0.02562 * 6 5 3 26 26 H 1.08002 * 119.81679 * 179.72351 * 7 6 5 27 27 H 0.96999 * 120.00669 * 0.02562 * 9 8 7 28 28 H 0.97006 * 119.99846 * 179.97438 * 9 8 7 29 29 H 0.96996 * 120.00495 * 179.97438 * 14 13 11 30 30 H 1.08005 * 120.17680 * 0.02562 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2440 2.3428 0.0005 5 6 3.4763 1.6892 -0.0006 6 6 4.3886 0.6203 -0.0069 7 6 5.7434 0.8596 -0.0017 8 6 6.2267 2.1632 -0.0016 9 7 7.5883 2.3961 -0.0017 10 6 5.3201 3.2524 -0.0010 11 6 5.8030 4.5788 -0.0015 12 1 6.7752 4.7997 0.4138 13 6 5.0223 5.6074 -0.5402 14 7 4.0063 5.3211 -1.3139 15 14 5.4299 7.3891 -0.1548 16 1 6.8036 7.6961 -0.6280 17 1 4.4591 8.2787 -0.8413 18 1 5.3509 7.6090 1.3117 19 6 3.9397 3.0035 0.0000 20 1 -0.3634 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8932 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 4.0236 -0.3962 -0.0117 26 1 6.4352 0.0302 -0.0021 27 1 8.2081 1.6500 -0.0021 28 1 7.9247 3.3060 -0.0020 29 1 3.4648 6.0341 -1.6871 30 1 3.2397 3.8260 0.0012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307296119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:12 Heat of formation + Delta-G solvation = -33.432615 kcal Electronic energy + Delta-G solvation = -14307.902272 eV Core-core repulsion = 11874.129232 eV Total energy + Delta-G solvation = -2433.773040 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.83015 -37.35588 -33.64231 -33.29455 -32.21086 -29.60796 -28.14844 -25.51343 -23.92911 -21.25875 -20.93577 -18.67380 -17.04148 -16.06235 -15.74367 -15.16530 -14.76541 -14.69325 -14.17843 -12.99582 -12.67152 -12.55536 -12.38121 -11.86653 -11.78018 -11.64507 -11.30948 -11.19865 -11.07161 -10.73973 -10.47739 -10.13430 -9.58000 -9.33857 -9.12306 -8.61266 -7.49684 -6.71557 -6.43653 -4.16839 2.11881 2.86875 3.12330 3.13032 3.19492 3.69750 4.00283 4.71169 4.94789 5.09554 5.47826 5.50374 5.67396 5.81491 6.08401 6.12737 6.30523 6.31557 6.49804 6.55891 6.89956 6.99252 7.23660 7.34730 7.53161 7.77353 7.89126 8.11685 8.38495 8.62084 8.70869 8.78400 8.97909 9.03287 10.33026 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.009945 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.551343 B = 2814.743557 C = 3760.252664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.169 4.169 3 C 0.397 3.603 4 O -0.479 6.479 5 C -0.211 4.211 6 C -0.137 4.137 7 C -0.198 4.198 8 C 0.150 3.850 9 N -0.875 5.875 10 C 0.042 3.958 11 C -0.470 4.470 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.799 5.799 15 Si 0.906 3.094 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.069 4.069 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.379 0.621 28 H 0.395 0.605 29 H 0.280 0.720 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 -6.184 1.630 6.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.206 4.206 3 C 0.278 3.722 4 O -0.357 6.357 5 C -0.213 4.213 6 C -0.157 4.157 7 C -0.221 4.221 8 C 0.046 3.954 9 N -0.414 5.414 10 C 0.037 3.963 11 C -0.501 4.501 12 H 0.090 0.910 13 C -0.143 4.143 14 N -0.425 5.425 15 Si 0.731 3.269 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.090 4.090 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.205 0.795 28 H 0.224 0.776 29 H 0.091 0.909 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.178 -5.591 1.477 5.785 hybrid contribution 0.692 0.738 0.018 1.012 sum 0.870 -4.853 1.494 5.152 Atomic orbital electron populations 1.21567 0.94824 1.00644 1.02754 1.21954 0.97058 0.97814 1.03794 1.22417 0.89285 0.89742 0.70745 1.90441 1.58833 1.47863 1.38608 1.19897 0.92566 0.95045 1.13841 1.20354 0.92374 0.96145 1.06862 1.19940 0.95097 0.93732 1.13375 1.18166 0.84168 0.93264 0.99813 1.41905 1.03831 1.09480 1.86203 1.17185 0.90765 0.91678 0.96631 1.19042 1.03450 0.91326 1.36297 0.90993 1.25765 0.94351 1.01199 0.92936 1.69782 1.15000 1.35201 1.22518 0.86415 0.78912 0.81905 0.79682 1.19339 1.20441 1.19068 1.21465 0.95461 0.94235 0.97888 0.92503 0.92436 0.92968 0.89196 0.89221 0.88460 0.88860 0.79482 0.77645 0.90854 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.20 37.15 0.34 -1.70 16 2 C -0.17 -2.69 5.01 -27.88 -0.14 -2.83 16 3 C 0.40 8.57 7.10 -30.82 -0.22 8.36 16 4 O -0.48 -11.80 15.95 5.54 0.09 -11.71 16 5 C -0.21 -4.98 5.86 -105.12 -0.62 -5.59 16 6 C -0.14 -2.87 9.45 -38.96 -0.37 -3.24 16 7 C -0.20 -4.16 9.84 -39.53 -0.39 -4.55 16 8 C 0.15 3.42 6.78 -83.40 -0.57 2.86 16 9 N -0.87 -16.43 8.95 32.70 0.29 -16.14 16 10 C 0.04 1.10 5.57 -106.70 -0.59 0.51 16 11 C -0.47 -12.17 8.47 -37.85 -0.32 -12.49 16 12 H 0.07 1.73 6.70 -52.49 -0.35 1.38 16 13 C 0.07 1.89 5.16 -17.33 -0.09 1.80 16 14 N -0.80 -21.56 10.98 55.55 0.61 -20.95 16 15 Si 0.91 19.12 29.59 -169.99 -5.03 14.09 16 16 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 C -0.07 -1.85 8.21 -38.40 -0.32 -2.16 16 20 H 0.06 0.86 8.10 -51.92 -0.42 0.43 16 21 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 24 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 25 H 0.10 1.69 7.00 -52.49 -0.37 1.33 16 26 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.38 5.82 8.82 -40.82 -0.36 5.46 16 28 H 0.39 7.31 7.03 -40.82 -0.29 7.02 16 29 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 30 H 0.13 3.83 5.80 -52.48 -0.30 3.53 16 LS Contribution 259.62 15.07 3.91 3.91 Total: -1.00 -29.37 259.62 -6.73 -36.10 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -3.33 Total: 13.74 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -3.28 Total: -19.04 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.90 Total: -37.09 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.37 -6.73 -36.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307296119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.668 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds