Wall clock time and date at job start Mon Mar 30 2020 03:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00082 * 2 1 4 4 H 1.48502 * 109.47176 * 270.00731 * 3 2 1 5 5 H 1.48505 * 109.47106 * 30.00110 * 3 2 1 6 6 H 1.48502 * 109.47411 * 150.00350 * 3 2 1 7 7 C 1.37874 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00420 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99970 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.82150 * 59.43090 * 9 7 2 11 11 C 1.54429 * 109.85344 * 180.37867 * 9 7 2 12 12 C 1.55306 * 102.23000 * 140.83502 * 11 9 7 13 13 C 1.54947 * 100.97824 * 325.92130 * 12 11 9 14 14 H 1.09003 * 110.30537 * 277.40785 * 13 12 11 15 15 C 1.50697 * 110.30950 * 155.34179 * 13 12 11 16 16 C 1.38655 * 120.78707 * 279.71218 * 15 13 12 17 17 C 1.38203 * 119.16275 * 179.79861 * 16 15 13 18 18 N 1.31873 * 120.76414 * 0.49063 * 17 16 15 19 19 C 1.31868 * 121.72402 * 359.74307 * 18 17 16 20 20 C 1.38209 * 120.76636 * 0.02562 * 19 18 17 21 21 O 1.43234 * 109.83028 * 298.55103 * 9 7 2 22 22 H 0.97001 * 119.99974 * 359.97438 * 1 2 3 23 23 H 1.09001 * 110.83577 * 22.66185 * 11 9 7 24 24 H 1.09006 * 110.89055 * 259.02927 * 11 9 7 25 25 H 1.09002 * 111.12770 * 207.97856 * 12 11 9 26 26 H 1.08995 * 111.12571 * 83.85771 * 12 11 9 27 27 H 1.07999 * 120.41372 * 0.02562 * 16 15 13 28 28 H 1.07998 * 119.61793 * 180.20628 * 17 16 15 29 29 H 1.07999 * 119.61909 * 179.97438 * 19 18 17 30 30 H 1.08004 * 120.41913 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6143 -2.5583 -0.8832 11 6 2.2468 -3.6796 0.0084 12 6 1.5543 -4.6869 0.9664 13 6 0.8777 -3.7209 1.9714 14 1 1.5927 -3.4025 2.7300 15 6 -0.3089 -4.3868 2.6190 16 6 -1.5270 -4.4624 1.9609 17 6 -2.5920 -5.0844 2.5845 18 7 -2.4617 -5.5934 3.7941 19 6 -1.3201 -5.5355 4.4515 20 6 -0.2104 -4.9331 3.8895 21 8 0.4509 -2.5983 1.1833 22 1 -0.4850 0.8401 0.0004 23 1 3.2132 -3.3685 0.4051 24 1 2.3546 -4.1047 -0.9895 25 1 2.2866 -5.3223 1.4645 26 1 0.8131 -5.2859 0.4376 27 1 -1.6410 -4.0438 0.9719 28 1 -3.5431 -5.1505 2.0773 29 1 -1.2515 -5.9632 5.4409 30 1 0.7220 -4.8892 4.4328 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307474392.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:30 Heat of formation + Delta-G solvation = -16.043387 kcal Electronic energy + Delta-G solvation = -14477.237558 eV Core-core repulsion = 12044.218571 eV Total energy + Delta-G solvation = -2433.018986 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91497 -38.01161 -33.20004 -32.06087 -31.01876 -30.80702 -28.18399 -25.01468 -23.11095 -22.63750 -20.49553 -20.22766 -16.76482 -16.44201 -16.17555 -15.23243 -14.81920 -14.67586 -14.05212 -13.63599 -13.31001 -13.05434 -12.53849 -12.24420 -11.78105 -11.31579 -11.06211 -10.90874 -10.65008 -10.46960 -10.27042 -9.99880 -9.27979 -9.24089 -9.06543 -8.82859 -8.56547 -7.94323 -6.02076 -4.16322 1.45116 1.59424 3.28404 3.35730 3.38263 4.11012 4.40262 4.71633 4.77825 5.13520 5.18860 5.36122 5.42825 5.49103 5.57460 5.66635 5.94887 6.02659 6.05814 6.18941 6.27539 6.45606 6.49232 6.59496 6.73042 6.88644 7.03297 7.57533 7.84936 8.23067 8.23523 8.50706 8.98366 9.55720 11.04486 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041043 B = 0.007722 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.049581 B = 3625.066055 C = 3903.602448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.205 3.795 10 H 0.040 0.960 11 C -0.144 4.144 12 C -0.145 4.145 13 C 0.109 3.891 14 H 0.066 0.934 15 C -0.026 4.026 16 C -0.142 4.142 17 C 0.088 3.912 18 N -0.497 5.497 19 C 0.087 3.913 20 C -0.172 4.172 21 O -0.349 6.349 22 H 0.261 0.739 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.141 0.859 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 -9.413 4.217 10.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.150 3.850 10 H 0.058 0.942 11 C -0.182 4.182 12 C -0.183 4.183 13 C 0.050 3.950 14 H 0.084 0.916 15 C -0.034 4.034 16 C -0.161 4.161 17 C -0.068 4.068 18 N -0.207 5.207 19 C -0.069 4.069 20 C -0.192 4.192 21 O -0.268 6.268 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.159 0.841 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.957 -9.556 4.645 10.669 hybrid contribution 1.390 1.291 -0.388 1.937 sum 0.433 -8.265 4.257 9.307 Atomic orbital electron populations 1.70024 1.06005 1.26571 1.47215 1.25059 0.94743 0.99225 0.93659 0.86660 0.80007 0.83516 0.78124 1.20520 1.21100 1.19817 1.21382 0.92719 0.90725 1.53594 0.92223 1.20346 0.87821 0.92031 0.84821 0.94210 1.23232 1.00497 0.96282 0.98174 1.23237 0.99527 0.97925 0.97641 1.21614 0.90955 0.88044 0.94341 0.91592 1.20611 0.95984 0.93477 0.93363 1.22104 0.93050 0.98650 1.02345 1.22711 0.98686 0.94282 0.91101 1.67600 1.26092 1.18172 1.08790 1.22580 0.88331 0.96722 0.99310 1.21956 1.00448 1.00927 0.95831 1.88830 1.58595 1.43915 1.35467 0.92932 0.91391 0.91984 0.91503 0.91420 0.84129 0.83086 0.83270 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.46 12.91 55.43 0.72 -24.75 16 2 C 0.08 2.23 5.41 -17.82 -0.10 2.13 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.55 -15.09 8.75 -34.44 -0.30 -15.39 16 8 H 0.06 1.60 7.52 -52.48 -0.39 1.20 16 9 C 0.20 5.14 3.36 -27.13 -0.09 5.05 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 11 C -0.14 -2.85 6.54 -24.76 -0.16 -3.02 16 12 C -0.15 -2.51 6.56 -24.48 -0.16 -2.67 16 13 C 0.11 2.16 3.69 -26.86 -0.10 2.06 16 14 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 15 C -0.03 -0.46 5.06 -104.32 -0.53 -0.99 16 16 C -0.14 -2.48 9.47 -39.44 -0.37 -2.86 16 17 C 0.09 1.39 11.18 -17.55 -0.20 1.19 16 18 N -0.50 -7.99 10.36 -13.25 -0.14 -8.13 16 19 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 20 C -0.17 -2.59 9.80 -39.44 -0.39 -2.98 16 21 O -0.35 -8.79 9.50 -35.23 -0.33 -9.13 16 22 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.07 1.34 7.66 -51.93 -0.40 0.94 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 27 H 0.14 2.58 7.76 -52.49 -0.41 2.17 16 28 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 260.60 15.07 3.93 3.93 Total: -1.00 -30.95 260.60 -7.15 -38.10 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -3.71 Total: 0.13 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.59 Total: -16.41 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.58 Total: -32.87 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.33 Total: -9.13 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.95 -7.15 -38.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307474392.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.053 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds