Wall clock time and date at job start Mon Mar 30 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00082 * 2 1 4 4 H 1.48502 * 109.47176 * 270.00731 * 3 2 1 5 5 H 1.48505 * 109.47106 * 30.00110 * 3 2 1 6 6 H 1.48502 * 109.47411 * 150.00350 * 3 2 1 7 7 C 1.37874 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00420 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99970 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.82150 * 59.43090 * 9 7 2 11 11 C 1.54429 * 109.85344 * 180.37867 * 9 7 2 12 12 C 1.55306 * 102.23000 * 140.83502 * 11 9 7 13 13 C 1.54947 * 100.97824 * 325.92130 * 12 11 9 14 14 H 1.09003 * 110.30537 * 277.40785 * 13 12 11 15 15 C 1.50697 * 110.30950 * 155.34179 * 13 12 11 16 16 C 1.38655 * 120.78707 * 279.71218 * 15 13 12 17 17 C 1.38203 * 119.16275 * 179.79861 * 16 15 13 18 18 N 1.31873 * 120.76414 * 0.49063 * 17 16 15 19 19 C 1.31868 * 121.72402 * 359.74307 * 18 17 16 20 20 C 1.38209 * 120.76636 * 0.02562 * 19 18 17 21 21 O 1.43234 * 109.83028 * 298.55103 * 9 7 2 22 22 H 0.97001 * 119.99974 * 359.97438 * 1 2 3 23 23 H 1.09001 * 110.83577 * 22.66185 * 11 9 7 24 24 H 1.09006 * 110.89055 * 259.02927 * 11 9 7 25 25 H 1.09002 * 111.12770 * 207.97856 * 12 11 9 26 26 H 1.08995 * 111.12571 * 83.85771 * 12 11 9 27 27 H 1.07999 * 120.41372 * 0.02562 * 16 15 13 28 28 H 1.07998 * 119.61793 * 180.20628 * 17 16 15 29 29 H 1.07999 * 119.61909 * 179.97438 * 19 18 17 30 30 H 1.08004 * 120.41913 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6143 -2.5583 -0.8832 11 6 2.2468 -3.6796 0.0084 12 6 1.5543 -4.6869 0.9664 13 6 0.8777 -3.7209 1.9714 14 1 1.5927 -3.4025 2.7300 15 6 -0.3089 -4.3868 2.6190 16 6 -1.5270 -4.4624 1.9609 17 6 -2.5920 -5.0844 2.5845 18 7 -2.4617 -5.5934 3.7941 19 6 -1.3201 -5.5355 4.4515 20 6 -0.2104 -4.9331 3.8895 21 8 0.4509 -2.5983 1.1833 22 1 -0.4850 0.8401 0.0004 23 1 3.2132 -3.3685 0.4051 24 1 2.3546 -4.1047 -0.9895 25 1 2.2866 -5.3223 1.4645 26 1 0.8131 -5.2859 0.4376 27 1 -1.6410 -4.0438 0.9719 28 1 -3.5431 -5.1505 2.0773 29 1 -1.2515 -5.9632 5.4409 30 1 0.7220 -4.8892 4.4328 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307474392.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:29 Heat of formation + Delta-G solvation = -35.632266 kcal Electronic energy + Delta-G solvation = -14478.086995 eV Core-core repulsion = 12044.218571 eV Total energy + Delta-G solvation = -2433.868424 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.21832 -39.64266 -34.98700 -33.75924 -32.65006 -32.05521 -29.91864 -26.83048 -24.38060 -24.12151 -22.06937 -21.87504 -18.64994 -17.98562 -17.56667 -16.65298 -16.44833 -16.27882 -15.69888 -14.98640 -14.76189 -14.49413 -14.13335 -13.87931 -13.66966 -12.81845 -12.61623 -12.51021 -12.40597 -12.25687 -12.05881 -11.61850 -11.12406 -10.72755 -10.53739 -10.37066 -10.03344 -9.82671 -8.13896 -6.35608 0.24572 0.30545 1.39330 1.40445 1.50888 2.39900 2.84941 3.07624 3.47687 3.63296 3.74504 3.84184 4.03940 4.20334 4.27531 4.31568 4.53858 4.61984 4.71456 4.74233 4.92296 4.95234 5.07204 5.11488 5.21120 5.48685 5.64191 5.74291 5.81724 6.17442 6.57306 7.00920 7.03373 7.41720 8.92781 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041043 B = 0.007722 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.049581 B = 3625.066055 C = 3903.602448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.564 4.564 8 H 0.063 0.937 9 C 0.197 3.803 10 H 0.004 0.996 11 C -0.136 4.136 12 C -0.129 4.129 13 C 0.100 3.900 14 H 0.068 0.932 15 C -0.045 4.045 16 C -0.163 4.163 17 C 0.090 3.910 18 N -0.509 5.509 19 C 0.093 3.907 20 C -0.167 4.167 21 O -0.383 6.383 22 H 0.260 0.740 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.174 0.826 29 H 0.189 0.811 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -10.485 5.648 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.602 4.602 8 H 0.082 0.918 9 C 0.141 3.859 10 H 0.021 0.979 11 C -0.174 4.174 12 C -0.167 4.167 13 C 0.042 3.958 14 H 0.085 0.915 15 C -0.054 4.054 16 C -0.183 4.183 17 C -0.066 4.066 18 N -0.219 5.219 19 C -0.064 4.064 20 C -0.187 4.187 21 O -0.303 6.303 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.121 0.879 26 H 0.090 0.910 27 H 0.137 0.863 28 H 0.191 0.809 29 H 0.206 0.794 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.139 -10.644 6.072 12.255 hybrid contribution 1.028 1.557 -0.781 2.023 sum 1.167 -9.087 5.291 10.580 Atomic orbital electron populations 1.70178 1.07696 1.27272 1.48852 1.25942 0.95561 1.03041 0.93393 0.85582 0.78753 0.78874 0.78525 1.19493 1.21156 1.18838 1.21839 0.93156 0.92200 1.52975 0.91847 1.20234 0.88178 0.93524 0.83927 0.97863 1.23109 0.99249 0.94991 1.00035 1.23174 0.99898 0.97186 0.96431 1.21834 0.92199 0.87353 0.94401 0.91450 1.20586 0.95295 0.94685 0.94795 1.22035 0.94143 1.00126 1.01976 1.22992 0.98999 0.93428 0.91174 1.67706 1.27031 1.18431 1.08745 1.23238 0.87339 0.95367 1.00432 1.22236 1.02003 0.99885 0.94536 1.88735 1.59188 1.46603 1.35824 0.93116 0.91062 0.90311 0.87870 0.90971 0.86305 0.80911 0.79366 0.82348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.12 12.91 21.45 0.28 -54.84 16 2 C 0.02 1.29 5.41 84.65 0.46 1.75 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.56 -31.69 8.75 25.60 0.22 -31.46 16 8 H 0.06 3.40 7.52 -2.91 -0.02 3.38 16 9 C 0.20 10.16 3.36 30.34 0.10 10.27 16 10 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 11 C -0.14 -5.29 6.54 31.87 0.21 -5.08 16 12 C -0.13 -4.25 6.56 32.05 0.21 -4.04 16 13 C 0.10 3.92 3.69 30.51 0.11 4.03 16 14 H 0.07 2.57 8.08 -2.39 -0.02 2.55 16 15 C -0.05 -1.58 5.06 -19.67 -0.10 -1.68 16 16 C -0.16 -5.76 9.47 22.36 0.21 -5.55 16 17 C 0.09 2.74 11.18 84.68 0.95 3.69 16 18 N -0.51 -15.23 10.36 -195.84 -2.03 -17.26 16 19 C 0.09 2.37 11.18 84.68 0.95 3.32 16 20 C -0.17 -4.58 9.80 22.36 0.22 -4.36 16 21 O -0.38 -19.93 9.50 -148.98 -1.42 -21.35 16 22 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 23 H 0.07 2.70 7.66 -2.39 -0.02 2.69 16 24 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 25 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.07 2.30 8.05 -2.39 -0.02 2.29 16 27 H 0.12 4.64 7.76 -2.91 -0.02 4.61 16 28 H 0.17 4.30 8.06 -2.91 -0.02 4.27 16 29 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 30 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -68.23 260.60 3.52 -64.71 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.12 Total: 11.67 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 3.54 Total: -29.12 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.75 Total: -72.10 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.42 Total: -21.35 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.23 3.52 -64.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307474392.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.082 kcal (2) G-P(sol) polarization free energy of solvation -68.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds