Wall clock time and date at job start Mon Mar 30 2020 03:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47612 * 2 1 4 4 O 1.21363 * 119.99612 * 359.97438 * 3 2 1 5 5 C 1.46436 * 120.00384 * 179.97438 * 3 2 1 6 6 C 1.40453 * 119.98844 * 5.87250 * 5 3 2 7 7 C 1.35977 * 120.28700 * 180.27386 * 6 5 3 8 8 C 1.41106 * 120.25664 * 359.45647 * 7 6 5 9 9 C 1.41101 * 120.01234 * 180.25142 * 8 7 6 10 10 H 1.07995 * 119.99615 * 29.20945 * 9 8 7 11 11 C 1.40274 * 119.99958 * 209.20858 * 9 8 7 12 12 N 1.30614 * 119.99755 * 15.20193 * 11 9 8 13 13 Si 1.86797 * 119.99952 * 195.20189 * 11 9 8 14 14 H 1.48506 * 109.47170 * 90.00130 * 13 11 9 15 15 H 1.48500 * 109.47046 * 209.99978 * 13 11 9 16 16 H 1.48500 * 109.47103 * 330.00240 * 13 11 9 17 17 C 1.40591 * 119.97270 * 0.27322 * 8 7 6 18 18 C 1.38268 * 119.71620 * 359.97438 * 17 8 7 19 19 N 1.38858 * 120.13265 * 179.97438 * 18 17 8 20 20 H 1.08998 * 109.46762 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46953 * 300.00143 * 1 2 3 22 22 H 1.09000 * 109.46485 * 60.00022 * 1 2 3 23 23 H 1.09003 * 109.47188 * 239.99637 * 2 1 3 24 24 H 1.09006 * 109.47328 * 119.99838 * 2 1 3 25 25 H 1.08000 * 119.85415 * 0.02631 * 6 5 3 26 26 H 1.07998 * 119.86736 * 179.72735 * 7 6 5 27 27 H 0.97011 * 119.99703 * 180.02562 * 12 11 9 28 28 H 1.07997 * 120.14477 * 180.02562 * 17 8 7 29 29 H 0.97002 * 119.99901 * 24.67870 * 19 18 17 30 30 H 0.96999 * 120.00343 * 204.67860 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 1.2438 2.3433 -0.0005 5 6 3.4722 1.6883 0.0006 6 6 4.3835 0.6268 -0.1234 7 6 5.7218 0.8678 -0.1180 8 6 6.2061 2.1878 0.0007 9 6 7.5957 2.4324 0.0004 10 1 8.2605 1.7696 -0.5334 11 6 8.1136 3.5366 0.6933 12 7 7.3755 4.1615 1.5712 13 14 9.8590 4.1132 0.3607 14 1 9.8483 5.1186 -0.7322 15 1 10.4209 4.7258 1.5913 16 1 10.6951 2.9538 -0.0414 17 6 5.3034 3.2591 0.1197 18 6 3.9429 3.0123 0.1192 19 7 3.0437 4.0639 0.2368 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 4.0198 -0.3855 -0.2193 26 1 6.4166 0.0460 -0.2093 27 1 7.7335 4.9254 2.0501 28 1 5.6710 4.2705 0.2103 29 1 3.3051 4.9581 -0.0333 30 1 2.1542 3.9043 0.5891 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307522437.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:29 Heat of formation + Delta-G solvation = -34.905651 kcal Electronic energy + Delta-G solvation = -14274.230229 eV Core-core repulsion = 11840.393314 eV Total energy + Delta-G solvation = -2433.836915 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.95770 -36.96940 -34.11343 -33.24296 -32.04355 -29.90361 -27.39802 -26.30185 -23.72438 -21.68397 -20.21489 -18.74753 -17.50088 -16.11368 -15.38449 -15.20181 -14.72876 -14.62575 -14.18072 -13.13294 -12.85557 -12.53631 -12.38482 -12.07386 -11.72890 -11.53358 -11.31018 -11.14806 -11.03939 -10.74929 -10.58753 -10.03878 -9.78543 -9.51858 -9.07741 -8.41963 -7.47853 -6.95247 -6.39259 -4.57565 2.13420 2.92156 2.99533 3.02219 3.21281 3.64956 3.80875 4.58298 5.01661 5.16489 5.49079 5.50774 5.64640 5.84827 6.07830 6.16522 6.30122 6.47012 6.54890 6.79255 6.89237 7.01773 7.16032 7.29937 7.70335 7.74274 7.90646 8.04099 8.34750 8.62566 8.71546 8.76037 8.95343 9.06743 10.00359 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.057471 B = 0.007192 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.081590 B = 3892.066701 C = 4277.348447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.167 4.167 3 C 0.400 3.600 4 O -0.518 6.518 5 C -0.358 4.358 6 C -0.025 4.025 7 C -0.247 4.247 8 C 0.157 3.843 9 C -0.448 4.448 10 H 0.084 0.916 11 C 0.075 3.925 12 N -0.771 5.771 13 Si 0.912 3.088 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.260 1.260 17 C -0.259 4.259 18 C 0.281 3.719 19 N -0.878 5.878 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.284 0.716 28 H 0.116 0.884 29 H 0.381 0.619 30 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 -3.073 -1.359 4.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.205 4.205 3 C 0.288 3.712 4 O -0.403 6.403 5 C -0.363 4.363 6 C -0.044 4.044 7 C -0.266 4.266 8 C 0.153 3.847 9 C -0.476 4.476 10 H 0.102 0.898 11 C -0.146 4.146 12 N -0.395 5.395 13 Si 0.736 3.264 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.184 1.184 17 C -0.283 4.283 18 C 0.175 3.825 19 N -0.424 5.424 20 H 0.068 0.932 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.134 0.866 29 H 0.207 0.793 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.560 -2.522 -1.166 4.516 hybrid contribution 0.769 0.464 0.037 0.899 sum -2.791 -2.058 -1.128 3.647 Atomic orbital electron populations 1.21535 0.94985 1.00459 1.02516 1.21903 0.96869 0.98178 1.03512 1.21904 0.88671 0.89510 0.71095 1.90203 1.58994 1.47197 1.43885 1.19215 0.92766 0.93369 1.30989 1.20348 0.93208 0.95804 0.95089 1.20703 0.94201 0.96338 1.15408 1.17522 0.93116 0.90247 0.83807 1.19814 0.92883 1.08116 1.26776 0.89808 1.26059 1.00391 0.95111 0.93067 1.69763 1.38014 1.15984 1.15690 0.86249 0.81410 0.79863 0.78916 1.19076 1.20128 1.18362 1.20709 0.89353 0.99600 1.18678 1.17744 0.89602 0.86457 0.88672 1.42673 1.17317 1.08171 1.74250 0.93161 0.92627 0.92620 0.89586 0.89513 0.88583 0.88623 0.90483 0.86606 0.79254 0.76695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.20 37.16 0.34 -1.61 16 2 C -0.17 -2.64 5.08 -27.88 -0.14 -2.78 16 3 C 0.40 8.18 7.07 -31.01 -0.22 7.96 16 4 O -0.52 -11.33 13.41 5.49 0.07 -11.26 16 5 C -0.36 -8.15 5.90 -104.71 -0.62 -8.77 16 6 C -0.03 -0.55 9.38 -39.56 -0.37 -0.92 16 7 C -0.25 -5.78 9.70 -39.31 -0.38 -6.16 16 8 C 0.16 4.06 5.53 -106.84 -0.59 3.47 16 9 C -0.45 -11.29 9.03 -37.73 -0.34 -11.63 16 10 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 11 C 0.07 1.79 5.15 -17.30 -0.09 1.70 16 12 N -0.77 -19.22 11.10 55.56 0.62 -18.60 16 13 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 14 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 15 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 16 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 17 C -0.26 -6.66 8.52 -38.68 -0.33 -6.98 16 18 C 0.28 6.79 6.75 -83.61 -0.56 6.22 16 19 N -0.88 -18.74 8.47 32.55 0.28 -18.47 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 22 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 23 H 0.09 1.24 7.89 -51.93 -0.41 0.83 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.10 1.73 6.94 -52.49 -0.36 1.36 16 26 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 27 H 0.28 6.41 8.29 -40.82 -0.34 6.08 16 28 H 0.12 3.07 6.40 -52.49 -0.34 2.73 16 29 H 0.38 7.30 8.90 -40.82 -0.36 6.94 16 30 H 0.40 8.38 6.10 -40.82 -0.25 8.13 16 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -27.48 258.18 -6.86 -34.34 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -3.38 Total: 16.95 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -3.30 Total: -19.52 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.89 Total: -37.07 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.48 -6.86 -34.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307522437.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.568 kcal (2) G-P(sol) polarization free energy of solvation -27.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds