Wall clock time and date at job start Mon Mar 30 2020 03:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47612 * 2 1 4 4 O 1.21363 * 119.99612 * 359.97438 * 3 2 1 5 5 C 1.46436 * 120.00384 * 179.97438 * 3 2 1 6 6 C 1.40453 * 119.98844 * 5.87250 * 5 3 2 7 7 C 1.35977 * 120.28700 * 180.27386 * 6 5 3 8 8 C 1.41106 * 120.25664 * 359.45647 * 7 6 5 9 9 C 1.41101 * 120.01234 * 180.25142 * 8 7 6 10 10 H 1.07995 * 119.99615 * 29.20945 * 9 8 7 11 11 C 1.40274 * 119.99958 * 209.20858 * 9 8 7 12 12 N 1.30614 * 119.99755 * 15.20193 * 11 9 8 13 13 Si 1.86797 * 119.99952 * 195.20189 * 11 9 8 14 14 H 1.48506 * 109.47170 * 90.00130 * 13 11 9 15 15 H 1.48500 * 109.47046 * 209.99978 * 13 11 9 16 16 H 1.48500 * 109.47103 * 330.00240 * 13 11 9 17 17 C 1.40591 * 119.97270 * 0.27322 * 8 7 6 18 18 C 1.38268 * 119.71620 * 359.97438 * 17 8 7 19 19 N 1.38858 * 120.13265 * 179.97438 * 18 17 8 20 20 H 1.08998 * 109.46762 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46953 * 300.00143 * 1 2 3 22 22 H 1.09000 * 109.46485 * 60.00022 * 1 2 3 23 23 H 1.09003 * 109.47188 * 239.99637 * 2 1 3 24 24 H 1.09006 * 109.47328 * 119.99838 * 2 1 3 25 25 H 1.08000 * 119.85415 * 0.02631 * 6 5 3 26 26 H 1.07998 * 119.86736 * 179.72735 * 7 6 5 27 27 H 0.97011 * 119.99703 * 180.02562 * 12 11 9 28 28 H 1.07997 * 120.14477 * 180.02562 * 17 8 7 29 29 H 0.97002 * 119.99901 * 24.67870 * 19 18 17 30 30 H 0.96999 * 120.00343 * 204.67860 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 1.2438 2.3433 -0.0005 5 6 3.4722 1.6883 0.0006 6 6 4.3835 0.6268 -0.1234 7 6 5.7218 0.8678 -0.1180 8 6 6.2061 2.1878 0.0007 9 6 7.5957 2.4324 0.0004 10 1 8.2605 1.7696 -0.5334 11 6 8.1136 3.5366 0.6933 12 7 7.3755 4.1615 1.5712 13 14 9.8590 4.1132 0.3607 14 1 9.8483 5.1186 -0.7322 15 1 10.4209 4.7258 1.5913 16 1 10.6951 2.9538 -0.0414 17 6 5.3034 3.2591 0.1197 18 6 3.9429 3.0123 0.1192 19 7 3.0437 4.0639 0.2368 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 4.0198 -0.3855 -0.2193 26 1 6.4166 0.0460 -0.2093 27 1 7.7335 4.9254 2.0501 28 1 5.6710 4.2705 0.2103 29 1 3.3051 4.9581 -0.0333 30 1 2.1542 3.9043 0.5891 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307522437.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:28 Heat of formation + Delta-G solvation = -50.946675 kcal Electronic energy + Delta-G solvation = -14274.925820 eV Core-core repulsion = 11840.393314 eV Total energy + Delta-G solvation = -2434.532506 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.64276 -38.71555 -35.90537 -34.94305 -33.45696 -31.64227 -29.20303 -28.04439 -25.17640 -23.42064 -21.97146 -20.33777 -19.32391 -17.84400 -17.09655 -16.92930 -16.32399 -16.11120 -15.73195 -14.81016 -14.60955 -14.17549 -13.99848 -13.70602 -13.28905 -13.00501 -12.82749 -12.69881 -12.45148 -12.30395 -11.92852 -11.76162 -11.59626 -11.27396 -10.83646 -10.07096 -9.33317 -8.73866 -8.19358 -6.47223 0.41135 1.34621 1.38332 1.41907 1.53104 1.95723 2.18455 2.79652 3.41895 3.60275 3.75620 4.27912 4.37093 4.43361 4.68412 4.86976 5.03733 5.07141 5.11300 5.15343 5.25136 5.32407 5.37546 5.49832 5.89193 5.91323 6.09765 6.21314 6.51474 6.80097 6.91314 7.03485 7.15101 7.34928 8.24579 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.057471 B = 0.007192 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.081590 B = 3892.066701 C = 4277.348447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.161 4.161 3 C 0.397 3.603 4 O -0.535 6.535 5 C -0.375 4.375 6 C -0.013 4.013 7 C -0.268 4.268 8 C 0.129 3.871 9 C -0.481 4.481 10 H 0.088 0.912 11 C 0.035 3.965 12 N -0.807 5.807 13 Si 0.986 3.014 14 H -0.263 1.263 15 H -0.268 1.268 16 H -0.252 1.252 17 C -0.282 4.282 18 C 0.265 3.735 19 N -0.871 5.871 20 H 0.083 0.917 21 H 0.044 0.956 22 H 0.045 0.955 23 H 0.108 0.892 24 H 0.106 0.894 25 H 0.140 0.860 26 H 0.110 0.890 27 H 0.291 0.709 28 H 0.096 0.904 29 H 0.389 0.611 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -4.584 -1.636 5.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.198 4.198 3 C 0.286 3.714 4 O -0.420 6.420 5 C -0.381 4.381 6 C -0.032 4.032 7 C -0.288 4.288 8 C 0.125 3.875 9 C -0.509 4.509 10 H 0.106 0.894 11 C -0.183 4.183 12 N -0.431 5.431 13 Si 0.807 3.193 14 H -0.188 1.188 15 H -0.193 1.193 16 H -0.176 1.176 17 C -0.307 4.307 18 C 0.158 3.842 19 N -0.418 5.418 20 H 0.102 0.898 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.127 0.873 24 H 0.124 0.876 25 H 0.157 0.843 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.216 0.784 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.899 -4.032 -1.443 5.792 hybrid contribution 0.713 0.913 0.127 1.166 sum -3.186 -3.119 -1.316 4.649 Atomic orbital electron populations 1.21533 0.93725 1.02352 1.01579 1.21916 0.97926 0.94549 1.05387 1.22399 0.87414 0.91781 0.69825 1.90193 1.59077 1.48540 1.44187 1.19734 0.94823 0.93066 1.30459 1.20727 0.92219 0.97524 0.92690 1.20925 0.95570 0.95802 1.16462 1.17927 0.93758 0.91435 0.84375 1.20100 0.93117 1.09637 1.28064 0.89396 1.26934 1.04621 0.94571 0.92165 1.69825 1.40116 1.16625 1.16582 0.85134 0.76003 0.79363 0.78849 1.18796 1.19302 1.17577 1.20643 0.90364 0.98924 1.20779 1.18032 0.89498 0.87982 0.88650 1.42614 1.16967 1.08241 1.73934 0.89841 0.93637 0.93571 0.87346 0.87612 0.84266 0.87239 0.89861 0.88559 0.78357 0.76425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 9.20 71.98 0.66 -2.68 16 2 C -0.16 -4.44 5.08 29.85 0.15 -4.29 16 3 C 0.40 15.41 7.07 27.82 0.20 15.61 16 4 O -0.54 -22.71 13.41 -3.29 -0.04 -22.76 16 5 C -0.38 -16.69 5.90 -19.92 -0.12 -16.80 16 6 C -0.01 -0.53 9.38 22.28 0.21 -0.32 16 7 C -0.27 -12.45 9.70 22.45 0.22 -12.23 16 8 C 0.13 6.82 5.53 -21.30 -0.12 6.70 16 9 C -0.48 -24.84 9.03 23.47 0.21 -24.63 16 10 H 0.09 4.28 7.90 -2.91 -0.02 4.26 16 11 C 0.03 1.69 5.15 85.37 0.44 2.13 16 12 N -0.81 -41.40 11.10 21.88 0.24 -41.16 16 13 Si 0.99 36.44 29.59 68.60 2.03 38.47 16 14 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 15 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 16 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 17 C -0.28 -15.02 8.52 22.85 0.19 -14.82 16 18 C 0.26 12.96 6.75 38.72 0.26 13.22 16 19 N -0.87 -37.65 8.47 -50.94 -0.43 -38.08 16 20 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 22 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 23 H 0.11 2.58 7.89 -2.39 -0.02 2.56 16 24 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 25 H 0.14 4.43 6.94 -2.91 -0.02 4.40 16 26 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 27 H 0.29 13.45 8.29 -92.70 -0.77 12.68 16 28 H 0.10 5.37 6.40 -2.91 -0.02 5.35 16 29 H 0.39 15.27 8.90 -92.71 -0.83 14.44 16 30 H 0.40 16.88 6.10 -92.71 -0.57 16.31 16 Total: -1.00 -60.23 258.18 3.89 -56.34 By element: Atomic # 1 Polarization: 45.53 SS G_CDS: -0.22 Total: 45.31 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 2.31 Total: -38.12 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -0.19 Total: -79.24 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.04 Total: -22.76 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -60.23 3.89 -56.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307522437.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.392 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds