Wall clock time and date at job start Mon Mar 30 2020 03:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46723 * 2 1 4 4 O 1.21314 * 120.00263 * 0.02562 * 3 2 1 5 5 C 1.46866 * 119.99760 * 180.02562 * 3 2 1 6 6 C 1.40563 * 119.86251 * 0.02562 * 5 3 2 7 7 C 1.35912 * 120.43897 * 180.02562 * 6 5 3 8 8 C 1.41030 * 120.14595 * 359.97438 * 7 6 5 9 9 C 1.40544 * 120.13896 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00157 * 206.99450 * 9 8 7 11 11 C 1.40362 * 119.99893 * 26.99233 * 9 8 7 12 12 N 1.30602 * 120.00045 * 25.33539 * 11 9 8 13 13 Si 1.86801 * 120.00065 * 205.33077 * 11 9 8 14 14 H 1.48504 * 109.47258 * 180.02562 * 13 11 9 15 15 H 1.48497 * 109.47455 * 300.00182 * 13 11 9 16 16 H 1.48499 * 109.47333 * 60.00482 * 13 11 9 17 17 C 1.41769 * 119.72418 * 0.25035 * 8 7 6 18 18 N 1.38715 * 120.21787 * 179.72325 * 17 8 7 19 19 C 1.38349 * 119.56853 * 359.53529 * 17 8 7 20 20 H 1.09000 * 109.47459 * 299.99926 * 1 2 3 21 21 H 1.09006 * 109.47360 * 59.99703 * 1 2 3 22 22 H 1.09001 * 109.47181 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47029 * 240.00209 * 2 1 3 24 24 H 1.08993 * 109.47069 * 120.00314 * 2 1 3 25 25 H 1.08001 * 119.77703 * 359.97438 * 6 5 3 26 26 H 1.08000 * 119.92633 * 179.97438 * 7 6 5 27 27 H 0.97000 * 120.00117 * 5.85289 * 12 11 9 28 28 H 0.97006 * 119.99963 * 359.97438 * 18 17 8 29 29 H 0.96996 * 120.00786 * 179.97438 * 18 17 8 30 30 H 1.08004 * 120.07374 * 180.18461 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2439 2.3429 0.0005 5 6 3.4762 1.6893 -0.0006 6 6 4.3870 0.6187 -0.0017 7 6 5.7257 0.8536 -0.0017 8 6 6.2125 2.1773 -0.0011 9 6 7.5968 2.4200 -0.0006 10 1 7.9846 3.3341 0.4243 11 6 8.4753 1.4745 -0.5523 12 7 8.0530 0.6497 -1.4726 13 14 10.2486 1.3960 0.0297 14 1 10.9633 0.3206 -0.7038 15 1 10.9133 2.6981 -0.2308 16 1 10.2794 1.1072 1.4860 17 6 5.2997 3.2619 0.0048 18 7 5.7672 4.5679 0.0112 19 6 3.9394 3.0095 0.0002 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 4.0207 -0.3973 -0.0017 26 1 6.4182 0.0249 -0.0021 27 1 7.1586 0.7448 -1.8357 28 1 6.7217 4.7413 0.0120 29 1 5.1400 5.3077 0.0148 30 1 3.2367 3.8297 0.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307659312.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:32 Heat of formation + Delta-G solvation = -43.082972 kcal Electronic energy + Delta-G solvation = -14209.739962 eV Core-core repulsion = 11775.548451 eV Total energy + Delta-G solvation = -2434.191510 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.87719 -37.50506 -34.09279 -33.40285 -32.19604 -29.62410 -27.72532 -26.25103 -23.72394 -21.49459 -20.75737 -18.76427 -17.93888 -16.13219 -15.93258 -14.78045 -14.73032 -14.37010 -14.16351 -13.54914 -13.07798 -12.61716 -12.38492 -12.26043 -11.84032 -11.55287 -11.34281 -11.20069 -11.16387 -10.76601 -10.53848 -9.93037 -9.83333 -9.46996 -9.19765 -8.65773 -7.73302 -7.50110 -6.62946 -4.46164 1.94323 2.96722 3.02621 3.05836 3.23984 3.58799 3.84910 4.47775 4.88853 5.18182 5.37389 5.46648 5.53525 5.81422 6.08592 6.17299 6.21954 6.28457 6.45733 6.53677 6.74133 6.85221 7.19678 7.32521 7.45348 7.56421 7.73726 7.89731 8.05899 8.30964 8.55538 8.63818 8.86519 8.93887 9.81270 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.044189 B = 0.007532 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.484292 B = 3716.794946 C = 4235.084710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.168 4.168 3 C 0.397 3.603 4 O -0.509 6.509 5 C -0.280 4.280 6 C -0.063 4.063 7 C -0.221 4.221 8 C 0.080 3.920 9 C -0.498 4.498 10 H 0.079 0.921 11 C 0.037 3.963 12 N -0.776 5.776 13 Si 1.066 2.934 14 H -0.272 1.272 15 H -0.275 1.275 16 H -0.273 1.273 17 C 0.096 3.904 18 N -0.885 5.885 19 C -0.111 4.111 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.304 0.696 28 H 0.391 0.609 29 H 0.380 0.620 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -0.930 1.716 2.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.206 4.206 3 C 0.283 3.717 4 O -0.391 6.391 5 C -0.283 4.283 6 C -0.083 4.083 7 C -0.241 4.241 8 C 0.075 3.925 9 C -0.525 4.525 10 H 0.097 0.903 11 C -0.187 4.187 12 N -0.398 5.398 13 Si 0.889 3.111 14 H -0.196 1.196 15 H -0.200 1.200 16 H -0.198 1.198 17 C -0.005 4.005 18 N -0.427 5.427 19 C -0.136 4.136 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.219 0.781 29 H 0.206 0.794 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.736 -1.455 1.485 2.205 hybrid contribution -1.252 1.078 0.141 1.658 sum -1.988 -0.376 1.626 2.595 Atomic orbital electron populations 1.21550 0.94904 1.00588 1.02554 1.21923 0.96953 0.97991 1.03726 1.22141 0.88929 0.89599 0.71016 1.90382 1.59021 1.47841 1.41883 1.19191 0.92518 0.93523 1.23056 1.20445 0.93334 0.96188 0.98307 1.20545 0.94435 0.95927 1.13210 1.17521 0.92658 0.90629 0.91699 1.20497 0.91790 1.06331 1.33932 0.90330 1.27169 1.07326 0.91177 0.93066 1.70358 1.22554 1.31020 1.15897 0.83607 0.72438 0.77720 0.77315 1.19642 1.20006 1.19796 1.17704 0.91808 0.85204 1.05785 1.41813 1.08797 1.03673 1.88422 1.20160 0.92567 0.95465 1.05419 0.92604 0.92585 0.93004 0.89349 0.89374 0.88644 0.87425 0.88243 0.78088 0.79432 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.20 37.16 0.34 -1.66 16 2 C -0.17 -2.72 5.00 -27.88 -0.14 -2.86 16 3 C 0.40 8.30 7.10 -30.82 -0.22 8.08 16 4 O -0.51 -11.76 15.94 5.53 0.09 -11.68 16 5 C -0.28 -6.38 5.88 -104.90 -0.62 -7.00 16 6 C -0.06 -1.39 9.38 -39.54 -0.37 -1.76 16 7 C -0.22 -5.33 7.88 -39.36 -0.31 -5.64 16 8 C 0.08 2.00 5.28 -106.62 -0.56 1.44 16 9 C -0.50 -12.05 8.39 -37.91 -0.32 -12.37 16 10 H 0.08 1.80 6.78 -52.48 -0.36 1.45 16 11 C 0.04 0.86 4.92 -17.28 -0.08 0.78 16 12 N -0.78 -19.16 12.34 55.57 0.69 -18.47 16 13 Si 1.07 19.78 30.01 -169.99 -5.10 14.68 16 14 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 15 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 16 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 17 C 0.10 2.25 6.78 -83.36 -0.56 1.69 16 18 N -0.88 -17.54 8.97 32.69 0.29 -17.25 16 19 C -0.11 -2.62 9.42 -38.91 -0.37 -2.99 16 20 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 21 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 24 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 25 H 0.10 1.82 6.99 -52.49 -0.37 1.45 16 26 H 0.11 2.64 6.58 -52.49 -0.35 2.29 16 27 H 0.30 7.75 6.76 -40.82 -0.28 7.47 16 28 H 0.39 7.42 7.05 -40.82 -0.29 7.13 16 29 H 0.38 6.52 8.83 -40.82 -0.36 6.16 16 30 H 0.10 2.28 7.62 -52.48 -0.40 1.88 16 LS Contribution 258.91 15.07 3.90 3.90 Total: -1.00 -27.45 258.91 -6.63 -34.09 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -3.29 Total: 17.02 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -3.21 Total: -22.30 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.98 Total: -35.72 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.10 Total: 14.68 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.45 -6.63 -34.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307659312.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.996 kcal (2) G-P(sol) polarization free energy of solvation -27.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds