Wall clock time and date at job start Mon Mar 30 2020 03:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46723 * 2 1 4 4 O 1.21314 * 120.00263 * 0.02562 * 3 2 1 5 5 C 1.46866 * 119.99760 * 180.02562 * 3 2 1 6 6 C 1.40563 * 119.86251 * 0.02562 * 5 3 2 7 7 C 1.35912 * 120.43897 * 180.02562 * 6 5 3 8 8 C 1.41030 * 120.14595 * 359.97438 * 7 6 5 9 9 C 1.40544 * 120.13896 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00157 * 206.99450 * 9 8 7 11 11 C 1.40362 * 119.99893 * 26.99233 * 9 8 7 12 12 N 1.30602 * 120.00045 * 25.33539 * 11 9 8 13 13 Si 1.86801 * 120.00065 * 205.33077 * 11 9 8 14 14 H 1.48504 * 109.47258 * 180.02562 * 13 11 9 15 15 H 1.48497 * 109.47455 * 300.00182 * 13 11 9 16 16 H 1.48499 * 109.47333 * 60.00482 * 13 11 9 17 17 C 1.41769 * 119.72418 * 0.25035 * 8 7 6 18 18 N 1.38715 * 120.21787 * 179.72325 * 17 8 7 19 19 C 1.38349 * 119.56853 * 359.53529 * 17 8 7 20 20 H 1.09000 * 109.47459 * 299.99926 * 1 2 3 21 21 H 1.09006 * 109.47360 * 59.99703 * 1 2 3 22 22 H 1.09001 * 109.47181 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47029 * 240.00209 * 2 1 3 24 24 H 1.08993 * 109.47069 * 120.00314 * 2 1 3 25 25 H 1.08001 * 119.77703 * 359.97438 * 6 5 3 26 26 H 1.08000 * 119.92633 * 179.97438 * 7 6 5 27 27 H 0.97000 * 120.00117 * 5.85289 * 12 11 9 28 28 H 0.97006 * 119.99963 * 359.97438 * 18 17 8 29 29 H 0.96996 * 120.00786 * 179.97438 * 18 17 8 30 30 H 1.08004 * 120.07374 * 180.18461 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2439 2.3429 0.0005 5 6 3.4762 1.6893 -0.0006 6 6 4.3870 0.6187 -0.0017 7 6 5.7257 0.8536 -0.0017 8 6 6.2125 2.1773 -0.0011 9 6 7.5968 2.4200 -0.0006 10 1 7.9846 3.3341 0.4243 11 6 8.4753 1.4745 -0.5523 12 7 8.0530 0.6497 -1.4726 13 14 10.2486 1.3960 0.0297 14 1 10.9633 0.3206 -0.7038 15 1 10.9133 2.6981 -0.2308 16 1 10.2794 1.1072 1.4860 17 6 5.2997 3.2619 0.0048 18 7 5.7672 4.5679 0.0112 19 6 3.9394 3.0095 0.0002 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 4.0207 -0.3973 -0.0017 26 1 6.4182 0.0249 -0.0021 27 1 7.1586 0.7448 -1.8357 28 1 6.7217 4.7413 0.0120 29 1 5.1400 5.3077 0.0148 30 1 3.2367 3.8297 0.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307659312.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:31 Heat of formation + Delta-G solvation = -59.082055 kcal Electronic energy + Delta-G solvation = -14210.433734 eV Core-core repulsion = 11775.548451 eV Total energy + Delta-G solvation = -2434.885283 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59902 -39.25377 -35.87012 -35.12644 -33.53774 -31.41826 -29.48058 -27.94079 -25.26125 -23.12735 -22.56001 -20.40616 -19.70264 -17.79399 -17.64636 -16.51055 -16.18904 -15.98171 -15.68593 -15.20581 -14.82079 -14.24816 -14.15559 -13.91534 -13.42763 -13.00116 -12.91894 -12.68885 -12.58539 -11.98836 -11.97270 -11.70465 -11.53528 -11.20472 -10.93322 -10.32914 -9.58850 -9.33134 -8.39187 -6.30571 0.18328 1.16052 1.49380 1.55353 1.81823 1.92837 2.31577 2.72719 3.33745 3.56938 3.62010 4.19364 4.31519 4.32416 4.43863 4.65181 4.89543 4.93926 5.02060 5.05301 5.09597 5.31650 5.37541 5.52532 5.65968 5.71602 5.92719 6.07893 6.26416 6.53472 6.76770 6.96647 7.10023 7.35308 7.96066 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.044189 B = 0.007532 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.484292 B = 3716.794946 C = 4235.084710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.163 4.163 3 C 0.395 3.605 4 O -0.534 6.534 5 C -0.290 4.290 6 C -0.059 4.059 7 C -0.237 4.237 8 C 0.053 3.947 9 C -0.521 4.521 10 H 0.084 0.916 11 C 0.006 3.994 12 N -0.797 5.797 13 Si 1.118 2.882 14 H -0.273 1.273 15 H -0.256 1.256 16 H -0.264 1.264 17 C 0.089 3.911 18 N -0.874 5.874 19 C -0.133 4.133 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.085 0.915 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.129 0.871 26 H 0.098 0.902 27 H 0.288 0.712 28 H 0.395 0.605 29 H 0.393 0.607 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.763 -1.706 2.158 3.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.200 4.200 3 C 0.282 3.718 4 O -0.418 6.418 5 C -0.293 4.293 6 C -0.079 4.079 7 C -0.258 4.258 8 C 0.047 3.953 9 C -0.548 4.548 10 H 0.102 0.898 11 C -0.213 4.213 12 N -0.419 5.419 13 Si 0.935 3.065 14 H -0.198 1.198 15 H -0.180 1.180 16 H -0.189 1.189 17 C -0.013 4.013 18 N -0.418 5.418 19 C -0.158 4.158 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.104 0.896 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.147 0.853 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.225 0.775 29 H 0.221 0.779 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.798 -2.198 1.926 3.030 hybrid contribution -1.376 1.366 0.007 1.938 sum -2.173 -0.832 1.933 3.025 Atomic orbital electron populations 1.21554 0.93544 1.02546 1.01665 1.21946 0.98116 0.94407 1.05501 1.22674 0.87808 0.91722 0.69556 1.90372 1.59298 1.49369 1.42802 1.19641 0.94178 0.93439 1.22037 1.20689 0.92428 0.97681 0.97069 1.20602 0.95262 0.95565 1.14335 1.17865 0.93469 0.91397 0.92552 1.20702 0.91971 1.07279 1.34869 0.89760 1.28503 1.10624 0.90144 0.92076 1.70470 1.21828 1.32218 1.17338 0.82975 0.68015 0.78448 0.77110 1.19807 1.18041 1.18916 1.17882 0.91821 0.86325 1.05234 1.41737 1.09426 1.02963 1.87638 1.20354 0.92684 0.96217 1.06573 0.93476 0.93582 0.89593 0.87490 0.87292 0.85338 0.88379 0.89916 0.77546 0.77916 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.20 71.98 0.66 -2.87 16 2 C -0.16 -4.74 5.00 29.85 0.15 -4.59 16 3 C 0.40 15.95 7.10 27.95 0.20 16.15 16 4 O -0.53 -24.34 15.94 -3.13 -0.05 -24.39 16 5 C -0.29 -13.02 5.88 -20.05 -0.12 -13.14 16 6 C -0.06 -2.55 9.38 22.30 0.21 -2.34 16 7 C -0.24 -11.50 7.88 22.41 0.18 -11.33 16 8 C 0.05 2.64 5.28 -21.16 -0.11 2.53 16 9 C -0.52 -25.30 8.39 23.35 0.20 -25.11 16 10 H 0.08 3.86 6.78 -2.91 -0.02 3.84 16 11 C 0.01 0.26 4.92 85.39 0.42 0.68 16 12 N -0.80 -39.73 12.34 21.90 0.27 -39.46 16 13 Si 1.12 39.03 30.01 68.60 2.06 41.09 16 14 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 15 H -0.26 -8.13 7.11 99.48 0.71 -7.43 16 16 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 17 C 0.09 4.23 6.78 38.95 0.26 4.49 16 18 N -0.87 -34.46 8.97 -50.50 -0.45 -34.92 16 19 C -0.13 -6.30 9.42 22.70 0.21 -6.09 16 20 H 0.05 1.29 8.10 -2.39 -0.02 1.28 16 21 H 0.04 1.28 8.10 -2.38 -0.02 1.26 16 22 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.11 2.79 8.07 -2.39 -0.02 2.77 16 24 H 0.11 2.79 8.07 -2.39 -0.02 2.77 16 25 H 0.13 4.58 6.99 -2.91 -0.02 4.56 16 26 H 0.10 4.88 6.58 -2.91 -0.02 4.86 16 27 H 0.29 15.08 6.76 -92.71 -0.63 14.45 16 28 H 0.40 14.86 7.05 -92.70 -0.65 14.21 16 29 H 0.39 13.30 8.83 -92.71 -0.82 12.48 16 30 H 0.10 4.54 7.62 -2.91 -0.02 4.52 16 Total: -1.00 -58.99 258.91 3.93 -55.06 By element: Atomic # 1 Polarization: 44.38 SS G_CDS: -0.16 Total: 44.22 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 2.26 Total: -41.61 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -0.18 Total: -74.37 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.39 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.06 Total: 41.09 kcal Total: -58.99 3.93 -55.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307659312.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.021 kcal (2) G-P(sol) polarization free energy of solvation -58.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds