Wall clock time and date at job start Mon Mar 30 2020 03:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09005 * 110.33371 * 60.51568 * 9 7 2 11 11 C 1.54472 * 110.37138 * 182.88593 * 9 7 2 12 12 C 1.54509 * 104.06600 * 142.80799 * 11 9 7 13 13 C 1.54487 * 104.05742 * 0.02562 * 12 11 9 14 14 H 1.08999 * 110.37251 * 94.85655 * 13 12 11 15 15 C 1.50705 * 110.37008 * 217.18979 * 13 12 11 16 16 C 1.38225 * 119.61941 * 121.83085 * 15 13 12 17 17 C 1.38630 * 119.16157 * 179.97438 * 16 15 13 18 18 C 1.38671 * 118.42062 * 0.02562 * 17 16 15 19 19 C 1.38184 * 119.16338 * 359.97438 * 18 17 16 20 20 N 1.31851 * 119.61549 * 301.56310 * 15 13 12 21 21 O 1.44425 * 110.36797 * 298.26605 * 9 7 2 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09008 * 110.51518 * 261.45519 * 11 9 7 24 24 H 1.09004 * 110.51511 * 24.16192 * 11 9 7 25 25 H 1.08996 * 110.51429 * 241.35886 * 12 11 9 26 26 H 1.09001 * 110.51157 * 118.64096 * 12 11 9 27 27 H 1.08000 * 120.41923 * 359.96438 * 16 15 13 28 28 H 1.08000 * 120.78545 * 180.02562 * 17 16 15 29 29 H 1.07996 * 120.41893 * 179.97438 * 18 17 16 30 30 H 1.07996 * 119.61571 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6297 -2.5739 -0.8979 11 6 2.2342 -3.6882 0.0694 12 6 1.5108 -4.7180 0.9658 13 6 0.1756 -4.0294 1.3261 14 1 -0.6099 -4.3410 0.6377 15 6 -0.2129 -4.3491 2.7467 16 6 -0.4012 -3.3211 3.6513 17 6 -0.7590 -3.6260 4.9555 18 6 -0.9142 -4.9596 5.3027 19 6 -0.7091 -5.9333 4.3439 20 7 -0.3745 -5.6060 3.1108 21 8 0.4392 -2.6163 1.1834 22 1 -0.4850 0.8401 -0.0004 23 1 2.4089 -4.1024 -0.9237 24 1 3.1743 -3.3784 0.5257 25 1 2.0931 -4.9171 1.8654 26 1 1.3277 -5.6412 0.4159 27 1 -0.2711 -2.2934 3.3460 28 1 -0.9132 -2.8435 5.6837 29 1 -1.1919 -5.2337 6.3097 30 1 -0.8284 -6.9741 4.6062 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307724640.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:01 Heat of formation + Delta-G solvation = -33.863880 kcal Electronic energy + Delta-G solvation = -14503.230671 eV Core-core repulsion = 12069.438931 eV Total energy + Delta-G solvation = -2433.791741 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.25946 -39.55216 -34.85039 -33.56651 -32.71613 -32.54515 -29.77540 -26.77800 -24.37627 -24.18547 -22.35680 -21.48932 -18.92665 -17.78455 -17.15068 -16.97748 -16.54490 -16.18871 -15.67939 -15.31172 -14.72460 -14.31915 -14.16896 -13.96153 -13.55616 -12.86021 -12.79388 -12.45156 -12.22418 -12.15559 -11.99498 -11.49592 -11.08252 -10.80709 -10.73303 -10.37392 -10.16624 -9.79239 -8.17279 -6.38064 0.20502 0.39370 1.40755 1.42079 1.53089 2.39878 2.86508 2.88423 3.24889 3.70413 3.91587 4.07148 4.08072 4.12402 4.28295 4.33875 4.52679 4.57101 4.71825 4.83431 4.95319 4.98408 5.05353 5.18860 5.29241 5.35944 5.48952 5.71913 5.84335 6.12471 6.47889 6.85937 7.06520 7.37127 8.91162 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038424 B = 0.008221 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.534881 B = 3404.919699 C = 3878.655924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.067 0.933 9 C 0.197 3.803 10 H -0.003 1.003 11 C -0.139 4.139 12 C -0.116 4.116 13 C 0.104 3.896 14 H 0.060 0.940 15 C 0.120 3.880 16 C -0.170 4.170 17 C -0.079 4.079 18 C -0.168 4.168 19 C 0.089 3.911 20 N -0.502 5.502 21 O -0.372 6.372 22 H 0.263 0.737 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.158 0.842 29 H 0.176 0.824 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 -9.224 9.198 13.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.086 0.914 9 C 0.141 3.859 10 H 0.014 0.986 11 C -0.177 4.177 12 C -0.154 4.154 13 C 0.045 3.955 14 H 0.078 0.922 15 C -0.016 4.016 16 C -0.190 4.190 17 C -0.105 4.105 18 C -0.187 4.187 19 C -0.069 4.069 20 N -0.213 5.213 21 O -0.292 6.292 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.133 0.867 28 H 0.176 0.824 29 H 0.194 0.806 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.723 -9.588 8.697 12.965 hybrid contribution 0.071 1.630 0.149 1.638 sum -0.652 -7.958 8.846 11.916 Atomic orbital electron populations 1.70184 1.07699 1.27544 1.48424 1.25984 0.95664 1.03162 0.93162 0.85484 0.78642 0.78421 0.78632 1.19336 1.20795 1.18962 1.21443 0.93113 0.91075 1.53286 0.91438 1.20478 0.87400 0.94092 0.83915 0.98552 1.22957 0.99386 0.95531 0.99816 1.22665 0.94615 0.98529 0.99638 1.21500 0.97263 0.85358 0.91366 0.92228 1.20874 0.95961 0.89304 0.95499 1.22017 1.00887 1.00810 0.95287 1.21956 0.94915 0.98587 0.95035 1.22527 1.00922 0.92590 1.02657 1.23392 0.94202 1.01929 0.87366 1.67284 1.13483 1.19488 1.21032 1.89397 1.72657 1.19593 1.47522 0.92857 0.90408 0.91876 0.91850 0.89211 0.86657 0.82443 0.80633 0.79153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.90 12.94 21.45 0.28 -54.62 16 2 C 0.02 1.29 5.42 84.66 0.46 1.75 16 3 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.55 -31.75 8.78 25.60 0.22 -31.53 16 8 H 0.07 3.72 7.59 -2.91 -0.02 3.70 16 9 C 0.20 10.62 3.11 30.35 0.09 10.71 16 10 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 11 C -0.14 -5.97 6.61 31.61 0.21 -5.76 16 12 C -0.12 -4.51 6.51 31.61 0.21 -4.31 16 13 C 0.10 4.63 3.77 30.35 0.11 4.74 16 14 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 15 C 0.12 4.75 6.02 42.55 0.26 5.01 16 16 C -0.17 -6.51 9.43 22.36 0.21 -6.30 16 17 C -0.08 -2.19 10.18 22.47 0.23 -1.96 16 18 C -0.17 -3.68 10.11 22.36 0.23 -3.45 16 19 C 0.09 2.22 11.18 84.67 0.95 3.16 16 20 N -0.50 -17.15 10.13 -183.88 -1.86 -19.02 16 21 O -0.37 -20.23 9.11 -148.98 -1.36 -21.59 16 22 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 23 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 24 H 0.06 2.70 7.73 -2.39 -0.02 2.68 16 25 H 0.06 2.40 7.87 -2.39 -0.02 2.38 16 26 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.12 5.17 7.06 -2.91 -0.02 5.15 16 28 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.19 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -69.23 259.46 3.38 -65.84 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.12 Total: 11.05 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 3.18 Total: -27.94 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.59 Total: -73.64 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -1.36 Total: -21.59 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -69.23 3.38 -65.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307724640.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.980 kcal (2) G-P(sol) polarization free energy of solvation -69.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds