Wall clock time and date at job start Mon Mar 30 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99859 * 2 1 4 4 H 1.48501 * 109.47053 * 239.99725 * 3 2 1 5 5 H 1.48495 * 109.47220 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47110 * 119.99892 * 3 2 1 7 7 C 1.37873 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00449 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.27689 * 57.90342 * 9 7 2 11 11 C 1.54942 * 110.30892 * 179.97438 * 9 7 2 12 12 C 1.55311 * 100.94034 * 155.35692 * 11 9 7 13 13 C 1.54384 * 102.25167 * 325.86853 * 12 11 9 14 14 H 1.08993 * 109.83241 * 261.74768 * 13 12 11 15 15 C 1.50706 * 109.82874 * 140.86624 * 13 12 11 16 16 C 1.38232 * 119.61338 * 124.99843 * 15 13 12 17 17 C 1.38624 * 119.15705 * 179.97438 * 16 15 13 18 18 C 1.38675 * 118.42145 * 0.02562 * 17 16 15 19 19 C 1.38178 * 119.16507 * 359.97438 * 18 17 16 20 20 N 1.31847 * 119.62208 * 304.72721 * 15 13 12 21 21 O 1.43234 * 107.58961 * 21.35344 * 13 12 11 22 22 H 0.97004 * 120.00469 * 359.97438 * 1 2 3 23 23 H 1.09000 * 111.12773 * 37.44573 * 11 9 7 24 24 H 1.08997 * 111.16609 * 273.28855 * 11 9 7 25 25 H 1.08994 * 110.84876 * 207.67653 * 12 11 9 26 26 H 1.09005 * 111.02101 * 84.13622 * 12 11 9 27 27 H 1.07996 * 120.42020 * 0.02562 * 16 15 13 28 28 H 1.08003 * 120.79128 * 180.02562 * 17 16 15 29 29 H 1.08003 * 120.41790 * 180.02562 * 18 17 16 30 30 H 1.08000 * 119.61563 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5920 -2.5549 -0.8659 11 6 2.2406 -3.6914 0.0005 12 6 1.3623 -4.8034 0.6364 13 6 0.4998 -4.0067 1.6387 14 1 0.9280 -4.0839 2.6380 15 6 -0.9078 -4.5451 1.6428 16 6 -1.4788 -4.9552 2.8330 17 6 -2.7743 -5.4484 2.8259 18 6 -3.4499 -5.5114 1.6165 19 6 -2.8142 -5.0832 0.4669 20 7 -1.5823 -4.6145 0.5120 21 8 0.4956 -2.6387 1.2143 22 1 -0.4851 0.8400 0.0004 23 1 3.1126 -3.4782 0.6187 24 1 2.5368 -3.9570 -1.0142 25 1 1.9802 -5.5373 1.1538 26 1 0.7375 -5.2859 -0.1153 27 1 -0.9229 -4.8914 3.7567 28 1 -3.2463 -5.7758 3.7406 29 1 -4.4606 -5.8898 1.5739 30 1 -3.3337 -5.1286 -0.4788 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307724641.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:05 Heat of formation + Delta-G solvation = -12.200084 kcal Electronic energy + Delta-G solvation = -14528.462472 eV Core-core repulsion = 12095.610144 eV Total energy + Delta-G solvation = -2432.852328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90688 -37.72210 -32.77970 -32.05619 -31.38514 -30.76469 -28.00589 -24.89365 -23.19324 -22.53235 -20.27519 -20.17326 -16.77853 -16.39698 -15.91946 -15.41641 -14.86310 -14.56402 -13.86403 -13.61044 -13.20065 -12.82893 -12.32399 -12.08451 -11.74663 -11.61596 -10.87519 -10.65402 -10.54043 -10.35754 -10.15717 -9.75132 -9.53321 -9.09267 -8.97313 -8.62105 -8.49816 -7.83657 -5.93461 -4.07526 1.45434 1.63272 3.36151 3.40472 3.42711 4.14641 4.47174 4.72375 4.99558 5.09410 5.20953 5.34121 5.42249 5.58969 5.64984 5.73844 5.93916 6.00927 6.21264 6.25989 6.39052 6.44016 6.64502 6.71339 6.82653 6.93006 7.05370 7.70814 7.96701 8.34550 8.49111 8.68405 9.08528 9.62951 11.13277 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.040266 B = 0.008046 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.205435 B = 3479.128711 C = 3797.439322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.214 3.786 10 H 0.034 0.966 11 C -0.145 4.145 12 C -0.144 4.144 13 C 0.119 3.881 14 H 0.074 0.926 15 C 0.139 3.861 16 C -0.171 4.171 17 C -0.081 4.081 18 C -0.190 4.190 19 C 0.098 3.902 20 N -0.458 5.458 21 O -0.344 6.344 22 H 0.261 0.739 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.683 -11.033 3.930 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.159 3.841 10 H 0.051 0.949 11 C -0.183 4.183 12 C -0.182 4.182 13 C 0.059 3.941 14 H 0.091 0.909 15 C 0.001 3.999 16 C -0.191 4.191 17 C -0.107 4.107 18 C -0.210 4.210 19 C -0.060 4.060 20 N -0.167 5.167 21 O -0.263 6.263 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.549 -10.453 3.254 11.509 hybrid contribution -0.116 0.442 0.810 0.930 sum -3.664 -10.011 4.064 11.409 Atomic orbital electron populations 1.70056 1.06017 1.26553 1.47021 1.25099 0.94750 0.99263 0.93765 0.86697 0.79698 0.83098 0.78667 1.20099 1.21238 1.20105 1.21109 0.92638 0.90194 1.53314 0.91973 1.20535 0.87316 0.91845 0.84395 0.94869 1.23320 0.99237 0.96027 0.99737 1.23086 0.98137 0.98257 0.98674 1.21441 0.87540 0.87094 0.98073 0.90875 1.22027 0.97552 0.92157 0.88164 1.21964 0.96246 1.01457 0.99396 1.21467 0.94333 0.96844 0.98041 1.22038 1.01148 1.03710 0.94075 1.22789 0.91219 0.93809 0.98137 1.67524 1.07865 1.11623 1.29730 1.88895 1.74795 1.18285 1.44328 0.92954 0.91709 0.91858 0.92033 0.90765 0.85135 0.85414 0.85454 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.57 13.05 55.43 0.72 -25.85 16 2 C 0.08 2.26 5.43 -17.82 -0.10 2.16 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.54 -15.49 8.79 -34.44 -0.30 -15.79 16 8 H 0.06 1.72 7.76 -52.48 -0.41 1.32 16 9 C 0.21 5.78 3.22 -26.86 -0.09 5.70 16 10 H 0.03 1.00 8.14 -51.93 -0.42 0.57 16 11 C -0.15 -3.14 6.53 -24.48 -0.16 -3.30 16 12 C -0.14 -2.74 6.50 -24.78 -0.16 -2.90 16 13 C 0.12 2.51 3.85 -27.15 -0.10 2.40 16 14 H 0.07 1.39 7.89 -51.93 -0.41 0.98 16 15 C 0.14 2.74 5.80 -82.58 -0.48 2.26 16 16 C -0.17 -2.74 9.72 -39.44 -0.38 -3.12 16 17 C -0.08 -1.10 10.18 -39.28 -0.40 -1.50 16 18 C -0.19 -2.57 10.11 -39.44 -0.40 -2.97 16 19 C 0.10 1.59 11.18 -17.55 -0.20 1.39 16 20 N -0.46 -9.30 9.60 -9.47 -0.09 -9.39 16 21 O -0.34 -9.38 10.36 -35.23 -0.37 -9.74 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.43 7.36 -51.93 -0.38 1.05 16 27 H 0.13 1.78 7.96 -52.49 -0.42 1.36 16 28 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 261.08 15.07 3.93 3.93 Total: -1.00 -33.39 261.08 -7.29 -40.68 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.71 Total: -0.81 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.77 Total: -15.65 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.63 Total: -35.23 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.37 Total: -9.74 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.39 -7.29 -40.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307724641.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.479 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds