Wall clock time and date at job start Mon Mar 30 2020 03:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99859 * 2 1 4 4 H 1.48501 * 109.47053 * 239.99725 * 3 2 1 5 5 H 1.48495 * 109.47220 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47110 * 119.99892 * 3 2 1 7 7 C 1.37873 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00449 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.27689 * 57.90342 * 9 7 2 11 11 C 1.54942 * 110.30892 * 179.97438 * 9 7 2 12 12 C 1.55311 * 100.94034 * 155.35692 * 11 9 7 13 13 C 1.54384 * 102.25167 * 325.86853 * 12 11 9 14 14 H 1.08993 * 109.83241 * 261.74768 * 13 12 11 15 15 C 1.50706 * 109.82874 * 140.86624 * 13 12 11 16 16 C 1.38232 * 119.61338 * 124.99843 * 15 13 12 17 17 C 1.38624 * 119.15705 * 179.97438 * 16 15 13 18 18 C 1.38675 * 118.42145 * 0.02562 * 17 16 15 19 19 C 1.38178 * 119.16507 * 359.97438 * 18 17 16 20 20 N 1.31847 * 119.62208 * 304.72721 * 15 13 12 21 21 O 1.43234 * 107.58961 * 21.35344 * 13 12 11 22 22 H 0.97004 * 120.00469 * 359.97438 * 1 2 3 23 23 H 1.09000 * 111.12773 * 37.44573 * 11 9 7 24 24 H 1.08997 * 111.16609 * 273.28855 * 11 9 7 25 25 H 1.08994 * 110.84876 * 207.67653 * 12 11 9 26 26 H 1.09005 * 111.02101 * 84.13622 * 12 11 9 27 27 H 1.07996 * 120.42020 * 0.02562 * 16 15 13 28 28 H 1.08003 * 120.79128 * 180.02562 * 17 16 15 29 29 H 1.08003 * 120.41790 * 180.02562 * 18 17 16 30 30 H 1.08000 * 119.61563 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5920 -2.5549 -0.8659 11 6 2.2406 -3.6914 0.0005 12 6 1.3623 -4.8034 0.6364 13 6 0.4998 -4.0067 1.6387 14 1 0.9280 -4.0839 2.6380 15 6 -0.9078 -4.5451 1.6428 16 6 -1.4788 -4.9552 2.8330 17 6 -2.7743 -5.4484 2.8259 18 6 -3.4499 -5.5114 1.6165 19 6 -2.8142 -5.0832 0.4669 20 7 -1.5823 -4.6145 0.5120 21 8 0.4956 -2.6387 1.2143 22 1 -0.4851 0.8400 0.0004 23 1 3.1126 -3.4782 0.6187 24 1 2.5368 -3.9570 -1.0142 25 1 1.9802 -5.5373 1.1538 26 1 0.7375 -5.2859 -0.1153 27 1 -0.9229 -4.8914 3.7567 28 1 -3.2463 -5.7758 3.7406 29 1 -4.4606 -5.8898 1.5739 30 1 -3.3337 -5.1286 -0.4788 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307724641.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:04 Heat of formation + Delta-G solvation = -34.916695 kcal Electronic energy + Delta-G solvation = -14529.447538 eV Core-core repulsion = 12095.610144 eV Total energy + Delta-G solvation = -2433.837394 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.23374 -39.44858 -34.83153 -33.33352 -32.89651 -32.51987 -29.78144 -26.75887 -24.45790 -24.04372 -22.11120 -21.75298 -18.67942 -17.90503 -17.35799 -16.88402 -16.56246 -16.33652 -15.54885 -15.01282 -14.68144 -14.26267 -13.96030 -13.81572 -13.58050 -12.89630 -12.78044 -12.41179 -12.24796 -12.21112 -12.02081 -11.51116 -11.03951 -10.74799 -10.72232 -10.32343 -9.91941 -9.73205 -8.13708 -6.36671 0.22705 0.47644 1.39777 1.44050 1.51572 2.40989 2.83566 3.13089 3.44302 3.77630 3.81389 3.95615 4.08996 4.23055 4.28850 4.34501 4.51782 4.69999 4.72322 4.84800 4.89112 4.96172 5.12249 5.22415 5.30694 5.34444 5.58805 5.76956 5.88694 6.19291 6.60808 7.02597 7.24204 7.40013 8.93827 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.040266 B = 0.008046 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.205435 B = 3479.128711 C = 3797.439322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.018 3.982 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.210 3.790 10 H -0.016 1.016 11 C -0.137 4.137 12 C -0.129 4.129 13 C 0.105 3.895 14 H 0.093 0.907 15 C 0.100 3.900 16 C -0.174 4.174 17 C -0.075 4.075 18 C -0.173 4.173 19 C 0.074 3.926 20 N -0.508 5.508 21 O -0.384 6.384 22 H 0.260 0.740 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.152 0.848 28 H 0.172 0.828 29 H 0.170 0.830 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -12.125 5.401 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.184 4.184 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.595 4.595 8 H 0.088 0.912 9 C 0.155 3.845 10 H 0.002 0.998 11 C -0.175 4.175 12 C -0.166 4.166 13 C 0.046 3.954 14 H 0.111 0.889 15 C -0.037 4.037 16 C -0.194 4.194 17 C -0.101 4.101 18 C -0.192 4.192 19 C -0.083 4.083 20 N -0.218 5.218 21 O -0.303 6.303 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.119 0.881 26 H 0.084 0.916 27 H 0.170 0.830 28 H 0.190 0.810 29 H 0.188 0.812 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.663 -11.568 4.728 13.022 hybrid contribution -0.192 0.666 0.373 0.787 sum -3.855 -10.902 5.101 12.638 Atomic orbital electron populations 1.70235 1.07991 1.27387 1.48653 1.26074 0.95613 1.03478 0.93194 0.85507 0.78295 0.77841 0.79322 1.18675 1.20950 1.19129 1.21585 0.93250 0.91571 1.53067 0.91243 1.20315 0.87486 0.93626 0.83115 0.99828 1.23194 0.98537 0.94750 1.00991 1.23001 0.97579 0.97863 0.98193 1.21769 0.89836 0.84682 0.99114 0.88946 1.21866 0.97258 0.94907 0.89649 1.22229 0.97575 1.00829 0.98734 1.22000 0.93192 0.95143 0.99770 1.22494 1.02560 1.01248 0.92934 1.23241 0.90478 0.94237 1.00349 1.67376 1.10034 1.13413 1.31025 1.88761 1.75254 1.22476 1.43841 0.93122 0.90826 0.90719 0.88117 0.91559 0.83037 0.81024 0.81240 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.15 13.05 21.45 0.28 -57.87 16 2 C 0.02 1.08 5.43 84.65 0.46 1.54 16 3 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.56 -33.16 8.79 25.60 0.23 -32.94 16 8 H 0.07 3.89 7.76 -2.91 -0.02 3.87 16 9 C 0.21 11.85 3.22 30.51 0.10 11.95 16 10 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 11 C -0.14 -5.95 6.53 32.05 0.21 -5.74 16 12 C -0.13 -4.86 6.50 31.86 0.21 -4.65 16 13 C 0.11 4.49 3.85 30.32 0.12 4.60 16 14 H 0.09 3.45 7.89 -2.39 -0.02 3.43 16 15 C 0.10 3.97 5.80 42.56 0.25 4.22 16 16 C -0.17 -5.25 9.72 22.36 0.22 -5.03 16 17 C -0.08 -1.77 10.18 22.47 0.23 -1.55 16 18 C -0.17 -4.13 10.11 22.36 0.23 -3.91 16 19 C 0.07 2.35 11.18 84.67 0.95 3.30 16 20 N -0.51 -21.09 9.60 -183.89 -1.77 -22.86 16 21 O -0.38 -21.73 10.36 -148.98 -1.54 -23.27 16 22 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 23 H 0.07 3.04 8.04 -2.39 -0.02 3.02 16 24 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 25 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 26 H 0.07 2.59 7.36 -2.38 -0.02 2.57 16 27 H 0.15 3.75 7.96 -2.91 -0.02 3.73 16 28 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 29 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.17 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -76.80 261.08 3.30 -73.50 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.12 Total: 11.08 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 3.18 Total: -28.22 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -1.49 Total: -80.73 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -1.54 Total: -23.27 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -76.80 3.30 -73.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307724641.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.585 kcal (2) G-P(sol) polarization free energy of solvation -76.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds