Wall clock time and date at job start Mon Mar 30 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86794 * 120.00531 * 2 1 4 4 H 1.48494 * 109.47456 * 240.00021 * 3 2 1 5 5 H 1.48509 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47407 * 119.99927 * 3 2 1 7 7 C 1.39932 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00175 * 163.92831 * 7 2 1 9 9 C 1.41053 * 119.99762 * 343.92636 * 7 2 1 10 10 C 1.40727 * 120.30590 * 333.76971 * 9 7 2 11 11 C 1.36451 * 119.94893 * 180.02562 * 10 9 7 12 12 C 1.50697 * 119.70089 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47431 * 89.99561 * 12 11 10 14 14 C 1.50698 * 109.47064 * 179.97438 * 13 12 11 15 15 O 1.20762 * 119.99868 * 125.00146 * 14 13 12 16 16 C 1.38903 * 120.59879 * 359.97438 * 11 10 9 17 17 C 1.38171 * 120.62592 * 0.02562 * 16 11 10 18 18 C 1.38756 * 120.02000 * 359.71434 * 17 16 11 19 19 N 1.38733 * 120.29110 * 180.27997 * 18 17 16 20 20 H 0.96999 * 119.99461 * 5.03778 * 1 2 3 21 21 H 1.07998 * 120.02628 * 359.97438 * 10 9 7 22 22 H 1.09002 * 109.46682 * 209.99812 * 12 11 10 23 23 H 1.08999 * 109.47217 * 329.98980 * 12 11 10 24 24 H 1.08995 * 109.47038 * 299.99663 * 13 12 11 25 25 H 1.09003 * 109.47026 * 60.00167 * 13 12 11 26 26 H 1.07997 * 120.00418 * 304.99893 * 14 13 12 27 27 H 1.07995 * 119.68988 * 180.02562 * 16 11 10 28 28 H 1.07992 * 119.98773 * 180.02562 * 17 16 11 29 29 H 0.96995 * 120.00638 * 174.22111 * 19 18 17 30 30 H 0.97011 * 119.99822 * 354.22383 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.0967 1.6963 -1.2124 5 1 1.2780 2.7464 -0.0006 6 1 3.0967 1.6963 1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0568 -1.2301 -0.2595 9 6 1.3444 -2.4096 0.3371 10 6 0.2135 -2.3830 1.1743 11 6 -0.4229 -3.5461 1.4967 12 6 -1.6338 -3.5110 2.3931 13 6 -2.8948 -3.3535 1.5412 14 6 -4.1056 -3.3190 2.4376 15 8 -4.8775 -2.3925 2.3744 16 6 0.0345 -4.7621 1.0053 17 6 1.1425 -4.8164 0.1815 18 6 1.8062 -3.6488 -0.1672 19 7 2.9157 -3.6963 -0.9987 20 1 -0.4849 0.8368 -0.0738 21 1 -0.1498 -1.4427 1.5619 22 1 -1.6924 -4.4396 2.9609 23 1 -1.5524 -2.6692 3.0809 24 1 -2.8360 -2.4249 0.9735 25 1 -2.9761 -4.1953 0.8535 26 1 -4.2831 -4.1229 3.1367 27 1 -0.4807 -5.6737 1.2695 28 1 1.4890 -5.7674 -0.1950 29 1 3.3259 -2.8734 -1.3076 30 1 3.2814 -4.5526 -1.2711 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396127232.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:06 Heat of formation + Delta-G solvation = -31.706548 kcal Electronic energy + Delta-G solvation = -14144.778780 eV Core-core repulsion = 11711.080588 eV Total energy + Delta-G solvation = -2433.698192 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.82170 -37.92765 -34.52412 -33.52323 -31.65158 -29.47868 -27.64370 -25.19021 -23.50775 -21.19096 -20.75622 -19.39798 -16.95160 -16.05825 -15.83619 -15.50606 -14.86212 -14.63104 -14.26038 -13.42875 -13.25450 -12.60066 -12.22569 -12.08192 -12.00057 -11.48645 -11.23686 -11.06837 -10.88558 -10.51229 -10.35026 -9.79864 -9.46310 -9.25455 -9.11562 -8.94905 -7.33374 -6.65324 -6.24771 -4.11835 2.24539 2.85460 3.11256 3.12866 3.17754 3.25572 3.99924 4.61484 4.71963 5.26169 5.40518 5.62725 5.67548 5.95532 6.10267 6.27300 6.32364 6.53642 6.57930 6.74547 7.06142 7.25185 7.33245 7.58103 7.65965 7.72669 7.89885 8.20150 8.28631 8.53870 8.82995 8.88102 9.11677 9.18949 10.33984 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.010022 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.080906 B = 2793.109702 C = 3946.013477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.467 4.467 8 H 0.071 0.929 9 C 0.061 3.939 10 C -0.128 4.128 11 C -0.120 4.120 12 C -0.053 4.053 13 C -0.183 4.183 14 C 0.346 3.654 15 O -0.475 6.475 16 C -0.186 4.186 17 C -0.182 4.182 18 C 0.116 3.884 19 N -0.885 5.885 20 H 0.278 0.722 21 H 0.118 0.882 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.391 0.609 30 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -5.072 2.013 5.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.498 4.498 8 H 0.089 0.911 9 C 0.057 3.943 10 C -0.149 4.149 11 C -0.121 4.121 12 C -0.091 4.091 13 C -0.221 4.221 14 C 0.203 3.797 15 O -0.347 6.347 16 C -0.206 4.206 17 C -0.205 4.205 18 C 0.014 3.986 19 N -0.426 5.426 20 H 0.089 0.911 21 H 0.136 0.864 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.219 0.781 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.367 -4.370 2.079 5.029 hybrid contribution 0.791 0.620 -0.425 1.091 sum -0.576 -3.750 1.654 4.139 Atomic orbital electron populations 1.69787 1.07261 1.28950 1.36947 1.25765 0.94716 1.00724 0.92865 0.86441 0.80054 0.80923 0.79628 1.19404 1.20513 1.19097 1.19113 0.96984 0.90956 1.42786 0.91132 1.17229 0.94072 0.90423 0.92625 1.20694 0.98148 0.96296 0.99756 1.18881 0.97340 0.93987 1.01907 1.20168 0.91678 1.00876 0.96378 1.22506 0.94358 1.05483 0.99722 1.26220 0.84233 0.86571 0.82658 1.90371 1.45304 1.35391 1.63623 1.19957 0.99770 0.95414 1.05452 1.19977 0.99873 0.94868 1.05828 1.17991 0.91089 0.94179 0.95298 1.41884 1.34315 1.08675 1.57759 0.91113 0.86414 0.92256 0.92207 0.88999 0.88804 0.89762 0.89616 0.89614 0.78067 0.79875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.94 10.96 55.55 0.61 -20.33 16 2 C 0.08 1.89 5.16 -17.32 -0.09 1.80 16 3 Si 0.90 18.94 29.59 -169.99 -5.03 13.91 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.47 -12.10 8.44 -37.88 -0.32 -12.42 16 8 H 0.07 1.74 6.81 -52.49 -0.36 1.38 16 9 C 0.06 1.59 5.57 -106.63 -0.59 0.99 16 10 C -0.13 -3.23 8.24 -39.29 -0.32 -3.55 16 11 C -0.12 -2.62 5.10 -105.02 -0.54 -3.15 16 12 C -0.05 -0.93 5.30 -27.89 -0.15 -1.08 16 13 C -0.18 -2.96 5.77 -27.89 -0.16 -3.12 16 14 C 0.35 4.92 11.19 36.00 0.40 5.32 16 15 O -0.47 -8.70 17.90 6.00 0.11 -8.59 16 16 C -0.19 -3.95 9.68 -39.36 -0.38 -4.33 16 17 C -0.18 -3.99 9.89 -39.41 -0.39 -4.38 16 18 C 0.12 2.72 6.79 -83.29 -0.57 2.16 16 19 N -0.89 -17.50 8.96 32.72 0.29 -17.21 16 20 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 21 H 0.12 3.13 6.22 -52.49 -0.33 2.81 16 22 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 23 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 24 H 0.09 1.78 8.12 -51.93 -0.42 1.36 16 25 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 26 H 0.09 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.09 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.39 7.62 7.14 -40.82 -0.29 7.33 16 30 H 0.38 6.21 8.84 -40.82 -0.36 5.85 16 LS Contribution 263.79 15.07 3.98 3.98 Total: -1.00 -29.07 263.79 -6.57 -35.64 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -3.42 Total: 14.34 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.10 Total: -21.74 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.90 Total: -37.54 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.11 Total: -8.59 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.07 -6.57 -35.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396127232.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.936 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds