Wall clock time and date at job start Mon Mar 30 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86794 * 120.00531 * 2 1 4 4 H 1.48494 * 109.47456 * 240.00021 * 3 2 1 5 5 H 1.48509 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47407 * 119.99927 * 3 2 1 7 7 C 1.39932 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00175 * 163.92831 * 7 2 1 9 9 C 1.41053 * 119.99762 * 343.92636 * 7 2 1 10 10 C 1.40727 * 120.30590 * 333.76971 * 9 7 2 11 11 C 1.36451 * 119.94893 * 180.02562 * 10 9 7 12 12 C 1.50697 * 119.70089 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47431 * 89.99561 * 12 11 10 14 14 C 1.50698 * 109.47064 * 179.97438 * 13 12 11 15 15 O 1.20762 * 119.99868 * 125.00146 * 14 13 12 16 16 C 1.38903 * 120.59879 * 359.97438 * 11 10 9 17 17 C 1.38171 * 120.62592 * 0.02562 * 16 11 10 18 18 C 1.38756 * 120.02000 * 359.71434 * 17 16 11 19 19 N 1.38733 * 120.29110 * 180.27997 * 18 17 16 20 20 H 0.96999 * 119.99461 * 5.03778 * 1 2 3 21 21 H 1.07998 * 120.02628 * 359.97438 * 10 9 7 22 22 H 1.09002 * 109.46682 * 209.99812 * 12 11 10 23 23 H 1.08999 * 109.47217 * 329.98980 * 12 11 10 24 24 H 1.08995 * 109.47038 * 299.99663 * 13 12 11 25 25 H 1.09003 * 109.47026 * 60.00167 * 13 12 11 26 26 H 1.07997 * 120.00418 * 304.99893 * 14 13 12 27 27 H 1.07995 * 119.68988 * 180.02562 * 16 11 10 28 28 H 1.07992 * 119.98773 * 180.02562 * 17 16 11 29 29 H 0.96995 * 120.00638 * 174.22111 * 19 18 17 30 30 H 0.97011 * 119.99822 * 354.22383 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.0967 1.6963 -1.2124 5 1 1.2780 2.7464 -0.0006 6 1 3.0967 1.6963 1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0568 -1.2301 -0.2595 9 6 1.3444 -2.4096 0.3371 10 6 0.2135 -2.3830 1.1743 11 6 -0.4229 -3.5461 1.4967 12 6 -1.6338 -3.5110 2.3931 13 6 -2.8948 -3.3535 1.5412 14 6 -4.1056 -3.3190 2.4376 15 8 -4.8775 -2.3925 2.3744 16 6 0.0345 -4.7621 1.0053 17 6 1.1425 -4.8164 0.1815 18 6 1.8062 -3.6488 -0.1672 19 7 2.9157 -3.6963 -0.9987 20 1 -0.4849 0.8368 -0.0738 21 1 -0.1498 -1.4427 1.5619 22 1 -1.6924 -4.4396 2.9609 23 1 -1.5524 -2.6692 3.0809 24 1 -2.8360 -2.4249 0.9735 25 1 -2.9761 -4.1953 0.8535 26 1 -4.2831 -4.1229 3.1367 27 1 -0.4807 -5.6737 1.2695 28 1 1.4890 -5.7674 -0.1950 29 1 3.3259 -2.8734 -1.3076 30 1 3.2814 -4.5526 -1.2711 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396127232.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:05 Heat of formation + Delta-G solvation = -50.037163 kcal Electronic energy + Delta-G solvation = -14145.573655 eV Core-core repulsion = 11711.080588 eV Total energy + Delta-G solvation = -2434.493067 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.16036 -39.59873 -36.11589 -35.35037 -33.16891 -31.31001 -29.24179 -27.01397 -24.99176 -22.99031 -22.00764 -21.08836 -18.78355 -17.64765 -17.29807 -17.08741 -16.50767 -16.11310 -15.60701 -15.05061 -14.76148 -14.31990 -13.90766 -13.71228 -13.67093 -13.10381 -12.86593 -12.77109 -12.56070 -12.15755 -11.80668 -11.47861 -11.18808 -10.96224 -10.78661 -10.39817 -9.17296 -8.51004 -7.97507 -6.02850 1.05743 1.13765 1.38168 1.40104 1.47997 1.55940 2.24395 2.86248 3.54208 3.67047 3.84500 4.16447 4.37782 4.48593 4.62311 4.80922 4.92571 4.96247 5.09379 5.21996 5.40332 5.43444 5.57051 5.80389 5.96995 6.08387 6.41078 6.47503 6.54063 6.75800 6.99067 7.07568 7.35117 7.57444 8.49564 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.010022 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.080906 B = 2793.109702 C = 3946.013477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.031 3.969 3 Si 0.972 3.028 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.496 4.496 8 H 0.073 0.927 9 C 0.018 3.982 10 C -0.152 4.152 11 C -0.129 4.129 12 C -0.049 4.049 13 C -0.180 4.180 14 C 0.364 3.636 15 O -0.521 6.521 16 C -0.175 4.175 17 C -0.192 4.192 18 C 0.105 3.895 19 N -0.875 5.875 20 H 0.278 0.722 21 H 0.090 0.910 22 H 0.102 0.898 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.111 0.889 26 H 0.151 0.849 27 H 0.125 0.875 28 H 0.115 0.885 29 H 0.391 0.609 30 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 -7.153 2.627 7.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.527 4.527 8 H 0.091 0.909 9 C 0.013 3.987 10 C -0.174 4.174 11 C -0.131 4.131 12 C -0.086 4.086 13 C -0.218 4.218 14 C 0.224 3.776 15 O -0.396 6.396 16 C -0.195 4.195 17 C -0.216 4.216 18 C 0.002 3.998 19 N -0.418 5.418 20 H 0.088 0.912 21 H 0.108 0.892 22 H 0.121 0.879 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.129 0.871 26 H 0.167 0.833 27 H 0.143 0.857 28 H 0.133 0.867 29 H 0.219 0.781 30 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.396 -6.490 2.679 7.159 hybrid contribution 0.820 1.074 -0.612 1.483 sum -0.576 -5.417 2.067 5.826 Atomic orbital electron populations 1.69899 1.08683 1.29545 1.38717 1.26553 0.95400 1.03859 0.92313 0.85397 0.78664 0.76703 0.79756 1.18389 1.20235 1.18965 1.19361 0.97242 0.91955 1.44189 0.90942 1.17617 0.95273 0.91742 0.94042 1.20688 0.99124 0.96640 1.00898 1.19303 0.98436 0.93211 1.02139 1.20162 0.90064 1.02619 0.95745 1.22455 0.95411 1.03798 1.00140 1.26685 0.82075 0.86887 0.81959 1.90381 1.46655 1.37670 1.64875 1.20448 0.99035 0.96399 1.03581 1.20407 0.99925 0.95474 1.05750 1.18224 0.91981 0.94039 0.95548 1.41794 1.33358 1.09724 1.56880 0.91182 0.89208 0.87930 0.93332 0.93677 0.87078 0.83288 0.85687 0.86667 0.78067 0.77851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.14 10.96 21.83 0.24 -45.90 16 2 C 0.03 1.60 5.16 85.24 0.44 2.04 16 3 Si 0.97 40.05 29.59 68.60 2.03 42.08 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.50 -26.58 8.44 23.37 0.20 -26.38 16 8 H 0.07 3.67 6.81 -2.91 -0.02 3.65 16 9 C 0.02 0.95 5.57 -21.17 -0.12 0.84 16 10 C -0.15 -7.95 8.24 22.46 0.19 -7.76 16 11 C -0.13 -5.54 5.10 -20.12 -0.10 -5.64 16 12 C -0.05 -1.59 5.30 29.85 0.16 -1.43 16 13 C -0.18 -5.57 5.77 29.85 0.17 -5.40 16 14 C 0.36 9.35 11.19 71.24 0.80 10.15 16 15 O -0.52 -18.63 17.90 -1.46 -0.03 -18.66 16 16 C -0.18 -6.90 9.68 22.41 0.22 -6.68 16 17 C -0.19 -7.95 9.89 22.38 0.22 -7.73 16 18 C 0.10 4.87 6.79 38.99 0.26 5.14 16 19 N -0.88 -33.89 8.96 -50.39 -0.45 -34.34 16 20 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 21 H 0.09 5.09 6.22 -2.91 -0.02 5.07 16 22 H 0.10 2.48 8.08 -2.39 -0.02 2.46 16 23 H 0.05 1.68 8.07 -2.39 -0.02 1.66 16 24 H 0.04 1.81 8.12 -2.39 -0.02 1.79 16 25 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 26 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 27 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 28 H 0.12 4.03 8.06 -2.91 -0.02 4.00 16 29 H 0.39 15.21 7.14 -92.71 -0.66 14.55 16 30 H 0.39 12.27 8.84 -92.70 -0.82 11.45 16 Total: -1.00 -66.37 263.79 3.91 -62.46 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: -0.32 Total: 37.22 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 2.43 Total: -42.86 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -0.21 Total: -80.24 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.03 Total: -18.66 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -66.37 3.91 -62.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396127232.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.425 kcal (2) G-P(sol) polarization free energy of solvation -66.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds