Wall clock time and date at job start Mon Mar 30 2020 02:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48501 * 109.47068 * 274.96635 * 3 2 1 5 5 H 1.48500 * 109.46962 * 34.96280 * 3 2 1 6 6 H 1.48496 * 109.47121 * 154.96399 * 3 2 1 7 7 C 1.39926 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99910 * 163.93500 * 7 2 1 9 9 C 1.41403 * 120.00550 * 343.93832 * 7 2 1 10 10 C 1.40788 * 120.20277 * 333.75671 * 9 7 2 11 11 C 1.37648 * 119.89336 * 180.02562 * 10 9 7 12 12 C 1.38526 * 120.32630 * 0.03246 * 11 10 9 13 13 C 1.39298 * 120.41862 * 0.22452 * 12 11 10 14 14 N 1.39686 * 119.94654 * 179.72656 * 13 12 11 15 15 C 1.38320 * 120.09678 * 359.49129 * 13 12 11 16 16 C 1.50701 * 120.15946 * 180.27600 * 15 13 12 17 17 C 1.52994 * 109.47300 * 270.25580 * 16 15 13 18 18 C 1.50701 * 109.47300 * 179.97438 * 17 16 15 19 19 O 1.20764 * 120.00128 * 124.99768 * 18 17 16 20 20 H 0.97002 * 119.99947 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.05726 * 0.05142 * 10 9 7 22 22 H 1.07996 * 119.83919 * 179.97438 * 11 10 9 23 23 H 1.07990 * 119.78944 * 179.97438 * 12 11 10 24 24 H 0.96998 * 120.00150 * 0.02562 * 14 13 12 25 25 H 0.97001 * 119.99942 * 180.02562 * 14 13 12 26 26 H 1.09004 * 109.47285 * 30.25469 * 16 15 13 27 27 H 1.08999 * 109.46915 * 150.24846 * 16 15 13 28 28 H 1.08998 * 109.47174 * 299.99831 * 17 16 15 29 29 H 1.08999 * 109.47053 * 60.00081 * 17 16 15 30 30 H 1.07999 * 119.99883 * 304.99872 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4962 2.6201 0.8023 6 1 3.5884 1.4121 0.5925 7 6 2.0079 -1.2118 0.0005 8 1 3.0563 -1.2303 -0.2583 9 6 1.3423 -2.4124 0.3399 10 6 0.2112 -2.3827 1.1776 11 6 -0.4315 -3.5553 1.5042 12 6 0.0294 -4.7658 1.0132 13 6 1.1505 -4.8112 0.1877 14 7 1.6102 -6.0378 -0.2972 15 6 1.8062 -3.6429 -0.1564 16 6 3.0155 -3.6897 -1.0544 17 6 4.2768 -3.8502 -0.2035 18 6 5.4861 -3.8976 -1.1016 19 8 6.3976 -3.1247 -0.9283 20 1 -0.4850 0.8401 0.0004 21 1 -0.1520 -1.4415 1.5630 22 1 -1.2989 -3.5315 2.1472 23 1 -0.4812 -5.6805 1.2754 24 1 1.1487 -6.8571 -0.0593 25 1 2.3911 -6.0703 -0.8718 26 1 2.9283 -4.5346 -1.7376 27 1 3.0788 -2.7645 -1.6272 28 1 4.3641 -3.0053 0.4796 29 1 4.2135 -4.7754 0.3691 30 1 5.5374 -4.6229 -1.9002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396128500.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:34 Heat of formation + Delta-G solvation = -30.979786 kcal Electronic energy + Delta-G solvation = -14404.626388 eV Core-core repulsion = 11970.959711 eV Total energy + Delta-G solvation = -2433.666677 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.83193 -37.96767 -34.34274 -33.27193 -32.32739 -29.28981 -27.27388 -25.36130 -23.85219 -20.82879 -20.66279 -19.40205 -17.29536 -16.28045 -15.75374 -15.35021 -14.77213 -14.61153 -14.18584 -13.62484 -13.17967 -12.80690 -12.26177 -12.09298 -11.88100 -11.42332 -11.09284 -10.99945 -10.72792 -10.47855 -10.43803 -9.66614 -9.52221 -9.38844 -9.05045 -8.88790 -7.28758 -6.72795 -6.25505 -4.33790 2.29896 2.83426 3.10602 3.14845 3.18702 3.36205 3.97246 4.67444 4.70922 4.86074 5.45266 5.69332 5.76441 6.05590 6.18462 6.32751 6.47394 6.60754 6.83294 6.95458 7.10736 7.14916 7.33813 7.46665 7.70343 7.85306 7.92809 8.13159 8.24146 8.49093 8.71594 8.78363 8.97313 9.08917 10.22865 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.018426 B = 0.013330 C = 0.008064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.191441 B = 2099.989472 C = 3471.384046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.078 3.922 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.149 3.851 10 C -0.199 4.199 11 C -0.073 4.073 12 C -0.306 4.306 13 C 0.233 3.767 14 N -0.895 5.895 15 C -0.265 4.265 16 C -0.034 4.034 17 C -0.184 4.184 18 C 0.345 3.655 19 O -0.476 6.476 20 H 0.279 0.721 21 H 0.114 0.886 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.382 0.618 25 H 0.385 0.615 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.224 -6.080 -1.437 7.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.146 3.854 10 C -0.219 4.219 11 C -0.092 4.092 12 C -0.330 4.330 13 C 0.133 3.867 14 N -0.437 5.437 15 C -0.270 4.270 16 C -0.071 4.071 17 C -0.222 4.222 18 C 0.202 3.798 19 O -0.348 6.348 20 H 0.090 0.910 21 H 0.132 0.868 22 H 0.103 0.897 23 H 0.101 0.899 24 H 0.208 0.792 25 H 0.212 0.788 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.483 -5.408 -1.322 6.567 hybrid contribution 0.147 0.329 -0.114 0.378 sum 3.630 -5.079 -1.436 6.406 Atomic orbital electron populations 1.69856 1.07513 1.28996 1.35163 1.25890 0.94666 1.01171 0.92255 0.86410 0.80940 0.81059 0.79049 1.19638 1.20089 1.18343 1.19573 0.97492 0.90897 1.40882 0.90306 1.17207 0.90199 0.90903 0.87077 1.21153 1.00508 0.96549 1.03712 1.20425 0.97639 0.92926 0.98250 1.19795 1.03255 0.96684 1.13239 1.17268 0.92556 0.84628 0.92283 1.42443 1.35855 1.05927 1.59468 1.18949 1.03796 0.92342 1.11962 1.19766 0.90680 1.00868 0.95810 1.22561 0.94997 1.04544 1.00123 1.26243 0.85734 0.82306 0.85479 1.90363 1.38652 1.37666 1.68141 0.91031 0.86821 0.89694 0.89878 0.79170 0.78770 0.93686 0.91140 0.89236 0.89430 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.36 10.97 55.55 0.61 -19.75 16 2 C 0.08 1.95 5.16 -17.35 -0.09 1.86 16 3 Si 0.90 18.93 29.59 -169.99 -5.03 13.90 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -11.83 8.11 -37.75 -0.31 -12.13 16 8 H 0.08 1.98 6.59 -52.48 -0.35 1.63 16 9 C 0.15 3.84 5.56 -106.86 -0.59 3.24 16 10 C -0.20 -5.14 8.68 -38.83 -0.34 -5.48 16 11 C -0.07 -1.72 10.02 -39.69 -0.40 -2.12 16 12 C -0.31 -6.77 9.90 -39.08 -0.39 -7.15 16 13 C 0.23 4.92 6.73 -83.86 -0.56 4.35 16 14 N -0.90 -14.30 8.98 32.38 0.29 -14.01 16 15 C -0.26 -5.96 5.21 -103.72 -0.54 -6.50 16 16 C -0.03 -0.62 4.26 -27.89 -0.12 -0.74 16 17 C -0.18 -3.04 5.75 -27.89 -0.16 -3.20 16 18 C 0.35 5.08 11.19 36.01 0.40 5.48 16 19 O -0.48 -8.91 17.90 6.00 0.11 -8.80 16 20 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 21 H 0.11 3.06 6.22 -52.49 -0.33 2.73 16 22 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 23 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 24 H 0.38 5.28 8.84 -40.82 -0.36 4.92 16 25 H 0.38 5.32 6.82 -40.82 -0.28 5.04 16 26 H 0.04 0.70 6.56 -51.93 -0.34 0.36 16 27 H 0.07 1.42 6.79 -51.93 -0.35 1.07 16 28 H 0.09 1.74 7.84 -51.93 -0.41 1.33 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.08 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 259.58 15.07 3.91 3.91 Total: -1.00 -29.04 259.58 -6.44 -35.48 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -3.24 Total: 11.67 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -3.09 Total: -22.40 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.90 Total: -33.76 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.11 Total: -8.80 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.04 -6.44 -35.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396128500.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.500 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds