Wall clock time and date at job start Mon Mar 30 2020 02:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48501 * 109.47068 * 274.96635 * 3 2 1 5 5 H 1.48500 * 109.46962 * 34.96280 * 3 2 1 6 6 H 1.48496 * 109.47121 * 154.96399 * 3 2 1 7 7 C 1.39926 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99910 * 163.93500 * 7 2 1 9 9 C 1.41403 * 120.00550 * 343.93832 * 7 2 1 10 10 C 1.40788 * 120.20277 * 333.75671 * 9 7 2 11 11 C 1.37648 * 119.89336 * 180.02562 * 10 9 7 12 12 C 1.38526 * 120.32630 * 0.03246 * 11 10 9 13 13 C 1.39298 * 120.41862 * 0.22452 * 12 11 10 14 14 N 1.39686 * 119.94654 * 179.72656 * 13 12 11 15 15 C 1.38320 * 120.09678 * 359.49129 * 13 12 11 16 16 C 1.50701 * 120.15946 * 180.27600 * 15 13 12 17 17 C 1.52994 * 109.47300 * 270.25580 * 16 15 13 18 18 C 1.50701 * 109.47300 * 179.97438 * 17 16 15 19 19 O 1.20764 * 120.00128 * 124.99768 * 18 17 16 20 20 H 0.97002 * 119.99947 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.05726 * 0.05142 * 10 9 7 22 22 H 1.07996 * 119.83919 * 179.97438 * 11 10 9 23 23 H 1.07990 * 119.78944 * 179.97438 * 12 11 10 24 24 H 0.96998 * 120.00150 * 0.02562 * 14 13 12 25 25 H 0.97001 * 119.99942 * 180.02562 * 14 13 12 26 26 H 1.09004 * 109.47285 * 30.25469 * 16 15 13 27 27 H 1.08999 * 109.46915 * 150.24846 * 16 15 13 28 28 H 1.08998 * 109.47174 * 299.99831 * 17 16 15 29 29 H 1.08999 * 109.47053 * 60.00081 * 17 16 15 30 30 H 1.07999 * 119.99883 * 304.99872 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4962 2.6201 0.8023 6 1 3.5884 1.4121 0.5925 7 6 2.0079 -1.2118 0.0005 8 1 3.0563 -1.2303 -0.2583 9 6 1.3423 -2.4124 0.3399 10 6 0.2112 -2.3827 1.1776 11 6 -0.4315 -3.5553 1.5042 12 6 0.0294 -4.7658 1.0132 13 6 1.1505 -4.8112 0.1877 14 7 1.6102 -6.0378 -0.2972 15 6 1.8062 -3.6429 -0.1564 16 6 3.0155 -3.6897 -1.0544 17 6 4.2768 -3.8502 -0.2035 18 6 5.4861 -3.8976 -1.1016 19 8 6.3976 -3.1247 -0.9283 20 1 -0.4850 0.8401 0.0004 21 1 -0.1520 -1.4415 1.5630 22 1 -1.2989 -3.5315 2.1472 23 1 -0.4812 -5.6805 1.2754 24 1 1.1487 -6.8571 -0.0593 25 1 2.3911 -6.0703 -0.8718 26 1 2.9283 -4.5346 -1.7376 27 1 3.0788 -2.7645 -1.6272 28 1 4.3641 -3.0053 0.4796 29 1 4.2135 -4.7754 0.3691 30 1 5.5374 -4.6229 -1.9002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396128500.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:34 Heat of formation + Delta-G solvation = -49.424042 kcal Electronic energy + Delta-G solvation = -14405.426191 eV Core-core repulsion = 11970.959711 eV Total energy + Delta-G solvation = -2434.466480 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.24552 -39.57380 -36.08438 -34.87348 -33.96769 -30.99599 -28.91597 -27.17606 -25.40778 -22.52978 -22.04312 -21.07668 -19.10057 -17.75828 -17.14562 -17.00436 -16.32826 -16.22446 -15.60570 -15.17846 -14.77070 -14.55633 -13.88609 -13.69881 -13.56659 -13.12921 -12.80153 -12.60690 -12.43495 -12.17100 -12.00041 -11.34146 -11.18670 -11.13173 -10.70358 -10.41930 -9.12409 -8.57490 -7.88208 -6.26367 1.02798 1.14783 1.36690 1.40327 1.49378 1.60302 2.21792 2.84722 3.47311 3.56048 3.84917 4.20119 4.42200 4.53616 4.66527 4.76768 4.88704 5.06389 5.20919 5.31431 5.39809 5.41048 5.56586 5.79149 6.08570 6.14635 6.28438 6.41405 6.54919 6.73068 6.98728 7.08158 7.28519 7.46268 8.40214 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.018426 B = 0.013330 C = 0.008064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.191441 B = 2099.989472 C = 3471.384046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.038 3.962 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.487 4.487 8 H 0.073 0.927 9 C 0.118 3.882 10 C -0.236 4.236 11 C -0.081 4.081 12 C -0.310 4.310 13 C 0.238 3.762 14 N -0.873 5.873 15 C -0.274 4.274 16 C -0.028 4.028 17 C -0.179 4.179 18 C 0.361 3.639 19 O -0.520 6.520 20 H 0.284 0.716 21 H 0.089 0.911 22 H 0.100 0.900 23 H 0.110 0.890 24 H 0.398 0.602 25 H 0.399 0.601 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.108 0.892 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -8.249 -2.436 9.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.177 4.177 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.517 4.517 8 H 0.092 0.908 9 C 0.115 3.885 10 C -0.256 4.256 11 C -0.100 4.100 12 C -0.333 4.333 13 C 0.134 3.866 14 N -0.416 5.416 15 C -0.281 4.281 16 C -0.066 4.066 17 C -0.217 4.217 18 C 0.221 3.779 19 O -0.395 6.395 20 H 0.094 0.906 21 H 0.107 0.893 22 H 0.119 0.881 23 H 0.129 0.871 24 H 0.227 0.773 25 H 0.230 0.770 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.126 0.874 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.330 -7.633 -2.337 9.081 hybrid contribution -0.175 0.792 0.212 0.838 sum 4.155 -6.842 -2.124 8.281 Atomic orbital electron populations 1.69921 1.08733 1.29933 1.36509 1.26614 0.95346 1.04031 0.91696 0.85437 0.79209 0.77294 0.79290 1.18812 1.19164 1.18931 1.19722 0.97394 0.92045 1.42540 0.90849 1.17573 0.90733 0.92461 0.87759 1.21097 1.02176 0.96571 1.05805 1.20669 0.97982 0.92947 0.98401 1.20161 1.03511 0.97000 1.12635 1.17313 0.91822 0.86024 0.91449 1.42263 1.36057 1.04670 1.58593 1.19349 1.04969 0.91843 1.11897 1.19720 0.89905 1.01330 0.95631 1.22467 0.95448 1.03843 0.99928 1.26698 0.83648 0.82161 0.85410 1.90373 1.40033 1.39826 1.69220 0.90589 0.89260 0.88148 0.87150 0.77307 0.77040 0.89841 0.93467 0.93245 0.87421 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.33 10.97 21.82 0.24 -44.09 16 2 C 0.04 1.95 5.16 85.25 0.44 2.39 16 3 Si 0.97 40.12 29.59 68.60 2.03 42.15 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.49 -26.18 8.11 23.46 0.19 -25.99 16 8 H 0.07 3.87 6.59 -2.91 -0.02 3.85 16 9 C 0.12 6.23 5.56 -21.31 -0.12 6.11 16 10 C -0.24 -12.67 8.68 22.75 0.20 -12.47 16 11 C -0.08 -3.82 10.02 22.20 0.22 -3.60 16 12 C -0.31 -13.05 9.90 22.59 0.22 -12.83 16 13 C 0.24 9.40 6.73 38.16 0.26 9.66 16 14 N -0.87 -23.95 8.98 -51.48 -0.46 -24.42 16 15 C -0.27 -12.16 5.21 -19.28 -0.10 -12.26 16 16 C -0.03 -1.00 4.26 29.85 0.13 -0.87 16 17 C -0.18 -5.59 5.75 29.85 0.17 -5.42 16 18 C 0.36 9.51 11.19 71.24 0.80 10.31 16 19 O -0.52 -18.74 17.90 -1.46 -0.03 -18.76 16 20 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 21 H 0.09 5.12 6.22 -2.91 -0.02 5.10 16 22 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 23 H 0.11 3.99 8.06 -2.92 -0.02 3.97 16 24 H 0.40 8.99 8.84 -92.71 -0.82 8.17 16 25 H 0.40 8.91 6.82 -92.71 -0.63 8.28 16 26 H 0.08 2.25 6.56 -2.39 -0.02 2.24 16 27 H 0.05 1.89 6.79 -2.39 -0.02 1.87 16 28 H 0.05 1.94 7.84 -2.39 -0.02 1.93 16 29 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -66.23 259.58 3.91 -62.32 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.28 Total: 27.75 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 2.41 Total: -44.95 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -0.22 Total: -68.50 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.03 Total: -18.76 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -66.23 3.91 -62.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396128500.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.899 kcal (2) G-P(sol) polarization free energy of solvation -66.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds