Wall clock time and date at job start Mon Mar 30 2020 02:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86803 * 119.99774 * 2 1 4 4 H 1.48504 * 109.46999 * 85.83067 * 3 2 1 5 5 H 1.48500 * 109.47115 * 205.82571 * 3 2 1 6 6 H 1.48495 * 109.47209 * 325.82947 * 3 2 1 7 7 C 1.39928 * 120.00423 * 179.72351 * 2 1 3 8 8 H 1.08001 * 119.99622 * 18.25846 * 7 2 1 9 9 C 1.41044 * 120.00036 * 198.26585 * 7 2 1 10 10 C 1.41576 * 120.30884 * 45.43577 * 9 7 2 11 11 N 1.38740 * 120.29351 * 359.97438 * 10 9 7 12 12 C 1.38709 * 119.41360 * 179.70089 * 10 9 7 13 13 C 1.38207 * 120.02351 * 0.59584 * 12 10 9 14 14 C 1.38855 * 120.62682 * 359.67441 * 13 12 10 15 15 C 1.36488 * 120.59811 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.02531 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47023 * 265.01943 * 16 15 14 18 18 C 1.50704 * 109.47276 * 179.97438 * 17 16 15 19 19 O 1.20756 * 119.99601 * 124.99586 * 18 17 16 20 20 H 0.96996 * 120.00247 * 359.97438 * 1 2 3 21 21 H 0.97007 * 119.99493 * 8.58473 * 11 10 9 22 22 H 0.96993 * 120.00537 * 188.58169 * 11 10 9 23 23 H 1.08002 * 119.98800 * 180.27132 * 12 10 9 24 24 H 1.07999 * 119.68323 * 179.69907 * 13 12 10 25 25 H 1.08001 * 119.70557 * 180.02562 * 14 13 12 26 26 H 1.09006 * 109.47413 * 25.01959 * 16 15 14 27 27 H 1.08996 * 109.47233 * 145.02283 * 16 15 14 28 28 H 1.08998 * 109.47193 * 299.99928 * 17 16 15 29 29 H 1.08996 * 109.46839 * 60.00098 * 17 16 15 30 30 H 1.08000 * 120.00141 * 305.00668 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4021 2.0974 1.3964 5 1 3.5817 1.4164 -0.6099 6 1 1.4871 2.6256 -0.7863 7 6 2.0085 -1.2117 0.0058 8 1 1.5093 -2.1249 -0.2828 9 6 3.3657 -1.2406 0.3888 10 6 3.7980 -0.5402 1.5407 11 7 2.8905 0.1813 2.3028 12 6 5.1359 -0.5863 1.9039 13 6 6.0364 -1.3012 1.1369 14 6 5.6149 -1.9840 0.0037 15 6 4.3034 -1.9609 -0.3736 16 6 3.8601 -2.7060 -1.6062 17 6 3.8423 -1.7504 -2.8010 18 6 3.3996 -2.4956 -4.0338 19 8 2.4620 -2.0922 -4.6790 20 1 -0.4850 0.8400 0.0004 21 1 1.9401 0.1082 2.1231 22 1 3.2063 0.7587 3.0153 23 1 5.4751 -0.0591 2.7833 24 1 7.0777 -1.3294 1.4220 25 1 6.3312 -2.5383 -0.5845 26 1 4.5529 -3.5237 -1.8053 27 1 2.8595 -3.1080 -1.4476 28 1 3.1495 -0.9327 -2.6019 29 1 4.8429 -1.3484 -2.9596 30 1 3.9209 -3.3906 -4.3401 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396129619.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:47 Heat of formation + Delta-G solvation = -19.149738 kcal Electronic energy + Delta-G solvation = -14666.854866 eV Core-core repulsion = 12233.701179 eV Total energy + Delta-G solvation = -2433.153688 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.81736 -38.26219 -34.47257 -33.52182 -32.05213 -29.80056 -27.86311 -25.24259 -23.87538 -20.71869 -20.59825 -19.67581 -17.65300 -15.92918 -15.74097 -15.48796 -15.08332 -14.38752 -14.07192 -13.84002 -13.49905 -12.77205 -12.39028 -12.23254 -12.12879 -11.56219 -11.45307 -11.09895 -10.78838 -10.40397 -10.19466 -9.98616 -9.65800 -9.25484 -9.06508 -8.80302 -7.46478 -6.74112 -6.38799 -4.26059 2.36536 2.59774 2.82892 3.22987 3.29215 3.38963 4.10362 4.60705 4.75341 5.07510 5.28944 5.55738 5.76249 5.99687 6.01626 6.10714 6.26896 6.32774 6.55548 6.68835 6.88301 6.93995 7.18916 7.26389 7.49970 7.68059 7.80206 7.88424 8.05288 8.40373 8.55432 8.84497 8.87734 9.00840 10.32861 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.014753 C = 0.009991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.588365 B = 1897.402092 C = 2801.802757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.303 1.303 7 C -0.471 4.471 8 H 0.088 0.912 9 C 0.044 3.956 10 C 0.134 3.866 11 N -0.880 5.880 12 C -0.183 4.183 13 C -0.171 4.171 14 C -0.139 4.139 15 C -0.134 4.134 16 C -0.044 4.044 17 C -0.181 4.181 18 C 0.346 3.654 19 O -0.472 6.472 20 H 0.278 0.722 21 H 0.402 0.598 22 H 0.381 0.619 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.733 -1.279 -0.298 7.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.232 1.232 7 C -0.502 4.502 8 H 0.105 0.895 9 C 0.039 3.961 10 C 0.032 3.968 11 N -0.425 5.425 12 C -0.206 4.206 13 C -0.191 4.191 14 C -0.159 4.159 15 C -0.136 4.136 16 C -0.081 4.081 17 C -0.219 4.219 18 C 0.203 3.797 19 O -0.344 6.344 20 H 0.088 0.912 21 H 0.235 0.765 22 H 0.207 0.793 23 H 0.111 0.889 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.974 -1.001 -0.701 7.081 hybrid contribution 0.212 1.008 0.390 1.101 sum 7.187 0.007 -0.311 7.193 Atomic orbital electron populations 1.69747 1.07734 1.29328 1.39191 1.25945 0.94575 1.00933 0.92282 0.86542 0.80603 0.80617 0.78631 1.18619 1.18264 1.23154 1.18912 0.92884 0.95725 1.42715 0.89451 1.17264 0.93847 0.94751 0.90257 1.18066 0.89215 0.97871 0.91672 1.42615 1.08786 1.51707 1.39359 1.20181 0.92492 1.06287 1.01672 1.20252 0.97360 1.03258 0.98240 1.20127 0.95031 1.02600 0.98158 1.19292 0.92417 1.05345 0.96566 1.19997 1.01457 0.95428 0.91224 1.22415 1.03688 1.01391 0.94414 1.26162 0.81917 0.87422 0.84199 1.90373 1.25318 1.66185 1.52483 0.91185 0.76529 0.79301 0.88864 0.88844 0.88918 0.92751 0.90963 0.88683 0.89386 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.36 13.93 55.55 0.77 -21.58 16 2 C 0.08 1.98 4.08 -17.32 -0.07 1.91 16 3 Si 0.91 21.16 24.35 -169.99 -4.14 17.02 16 4 H -0.26 -5.61 6.05 56.52 0.34 -5.26 16 5 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.47 -12.22 8.03 -37.89 -0.30 -12.53 16 8 H 0.09 2.44 7.16 -52.49 -0.38 2.07 16 9 C 0.04 1.06 4.64 -106.63 -0.49 0.56 16 10 C 0.13 3.04 5.29 -83.29 -0.44 2.60 16 11 N -0.88 -18.37 5.82 32.72 0.19 -18.18 16 12 C -0.18 -3.78 9.89 -39.42 -0.39 -4.17 16 13 C -0.17 -3.38 10.03 -39.36 -0.40 -3.77 16 14 C -0.14 -2.74 9.59 -39.98 -0.38 -3.12 16 15 C -0.13 -2.86 5.15 -104.33 -0.54 -3.40 16 16 C -0.04 -0.79 4.85 -27.89 -0.14 -0.93 16 17 C -0.18 -3.15 5.77 -27.88 -0.16 -3.31 16 18 C 0.35 5.40 11.19 36.01 0.40 5.80 16 19 O -0.47 -9.44 17.90 6.00 0.11 -9.33 16 20 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 21 H 0.40 8.92 5.67 -40.82 -0.23 8.69 16 22 H 0.38 6.77 8.83 -40.82 -0.36 6.41 16 23 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 24 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 25 H 0.09 1.55 8.05 -52.49 -0.42 1.13 16 26 H 0.05 0.81 8.04 -51.93 -0.42 0.39 16 27 H 0.07 1.43 6.77 -51.93 -0.35 1.08 16 28 H 0.09 2.01 7.94 -51.93 -0.41 1.60 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.08 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 253.85 15.07 3.83 3.83 Total: -1.00 -29.10 253.85 -5.61 -34.71 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -3.46 Total: 13.89 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -2.91 Total: -20.36 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.96 Total: -39.76 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.11 Total: -9.33 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.14 Total: 17.02 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.10 -5.61 -34.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396129619.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.561 kcal (2) G-P(sol) polarization free energy of solvation -29.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds