Wall clock time and date at job start Mon Mar 30 2020 02:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86803 * 119.99774 * 2 1 4 4 H 1.48504 * 109.46999 * 85.83067 * 3 2 1 5 5 H 1.48500 * 109.47115 * 205.82571 * 3 2 1 6 6 H 1.48495 * 109.47209 * 325.82947 * 3 2 1 7 7 C 1.39928 * 120.00423 * 179.72351 * 2 1 3 8 8 H 1.08001 * 119.99622 * 18.25846 * 7 2 1 9 9 C 1.41044 * 120.00036 * 198.26585 * 7 2 1 10 10 C 1.41576 * 120.30884 * 45.43577 * 9 7 2 11 11 N 1.38740 * 120.29351 * 359.97438 * 10 9 7 12 12 C 1.38709 * 119.41360 * 179.70089 * 10 9 7 13 13 C 1.38207 * 120.02351 * 0.59584 * 12 10 9 14 14 C 1.38855 * 120.62682 * 359.67441 * 13 12 10 15 15 C 1.36488 * 120.59811 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.02531 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47023 * 265.01943 * 16 15 14 18 18 C 1.50704 * 109.47276 * 179.97438 * 17 16 15 19 19 O 1.20756 * 119.99601 * 124.99586 * 18 17 16 20 20 H 0.96996 * 120.00247 * 359.97438 * 1 2 3 21 21 H 0.97007 * 119.99493 * 8.58473 * 11 10 9 22 22 H 0.96993 * 120.00537 * 188.58169 * 11 10 9 23 23 H 1.08002 * 119.98800 * 180.27132 * 12 10 9 24 24 H 1.07999 * 119.68323 * 179.69907 * 13 12 10 25 25 H 1.08001 * 119.70557 * 180.02562 * 14 13 12 26 26 H 1.09006 * 109.47413 * 25.01959 * 16 15 14 27 27 H 1.08996 * 109.47233 * 145.02283 * 16 15 14 28 28 H 1.08998 * 109.47193 * 299.99928 * 17 16 15 29 29 H 1.08996 * 109.46839 * 60.00098 * 17 16 15 30 30 H 1.08000 * 120.00141 * 305.00668 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4021 2.0974 1.3964 5 1 3.5817 1.4164 -0.6099 6 1 1.4871 2.6256 -0.7863 7 6 2.0085 -1.2117 0.0058 8 1 1.5093 -2.1249 -0.2828 9 6 3.3657 -1.2406 0.3888 10 6 3.7980 -0.5402 1.5407 11 7 2.8905 0.1813 2.3028 12 6 5.1359 -0.5863 1.9039 13 6 6.0364 -1.3012 1.1369 14 6 5.6149 -1.9840 0.0037 15 6 4.3034 -1.9609 -0.3736 16 6 3.8601 -2.7060 -1.6062 17 6 3.8423 -1.7504 -2.8010 18 6 3.3996 -2.4956 -4.0338 19 8 2.4620 -2.0922 -4.6790 20 1 -0.4850 0.8400 0.0004 21 1 1.9401 0.1082 2.1231 22 1 3.2063 0.7587 3.0153 23 1 5.4751 -0.0591 2.7833 24 1 7.0777 -1.3294 1.4220 25 1 6.3312 -2.5383 -0.5845 26 1 4.5529 -3.5237 -1.8053 27 1 2.8595 -3.1080 -1.4476 28 1 3.1495 -0.9327 -2.6019 29 1 4.8429 -1.3484 -2.9596 30 1 3.9209 -3.3906 -4.3401 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396129619.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:47 Heat of formation + Delta-G solvation = -38.913931 kcal Electronic energy + Delta-G solvation = -14667.711906 eV Core-core repulsion = 12233.701179 eV Total energy + Delta-G solvation = -2434.010727 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34632 -39.79132 -36.09333 -35.27915 -33.70695 -31.48991 -29.48027 -26.95471 -25.43846 -22.30946 -22.08012 -21.25697 -19.49840 -17.50232 -17.21973 -17.04813 -16.88773 -15.84493 -15.56720 -15.45766 -15.15385 -14.60114 -14.08730 -13.82081 -13.68643 -13.26007 -13.03546 -12.79358 -12.57266 -12.01764 -11.89772 -11.60736 -11.34034 -10.98012 -10.62245 -10.41714 -9.15314 -8.65212 -8.08185 -6.20158 0.86060 1.09209 1.23312 1.34024 1.44034 1.48500 2.20060 2.78005 3.43831 3.50899 3.62795 4.19418 4.32136 4.52338 4.56791 4.68884 4.83869 4.89196 5.02245 5.14907 5.26121 5.46457 5.46836 5.65218 5.81893 6.00863 6.16994 6.37887 6.51021 6.56906 6.80099 6.98672 7.10664 7.35393 8.46194 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.014753 C = 0.009991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.588365 B = 1897.402092 C = 2801.802757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.043 3.957 3 Si 0.957 3.043 4 H -0.232 1.232 5 H -0.276 1.276 6 H -0.312 1.312 7 C -0.480 4.480 8 H 0.045 0.955 9 C -0.002 4.002 10 C 0.122 3.878 11 N -0.879 5.879 12 C -0.194 4.194 13 C -0.154 4.154 14 C -0.148 4.148 15 C -0.131 4.131 16 C -0.043 4.043 17 C -0.181 4.181 18 C 0.361 3.639 19 O -0.523 6.523 20 H 0.279 0.721 21 H 0.394 0.606 22 H 0.395 0.605 23 H 0.120 0.880 24 H 0.132 0.868 25 H 0.133 0.867 26 H 0.102 0.898 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.115 0.885 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.577 -1.871 0.000 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.165 4.165 3 Si 0.783 3.217 4 H -0.155 1.155 5 H -0.201 1.201 6 H -0.242 1.242 7 C -0.513 4.513 8 H 0.063 0.937 9 C -0.007 4.007 10 C 0.019 3.981 11 N -0.424 5.424 12 C -0.217 4.217 13 C -0.173 4.173 14 C -0.167 4.167 15 C -0.133 4.133 16 C -0.080 4.080 17 C -0.219 4.219 18 C 0.221 3.779 19 O -0.398 6.398 20 H 0.089 0.911 21 H 0.225 0.775 22 H 0.224 0.776 23 H 0.138 0.862 24 H 0.149 0.851 25 H 0.151 0.849 26 H 0.120 0.880 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.133 0.867 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.861 -1.594 -0.360 10.983 hybrid contribution -0.703 1.044 0.343 1.305 sum 10.158 -0.550 -0.016 10.173 Atomic orbital electron populations 1.69808 1.08879 1.29814 1.42997 1.26423 0.94880 1.02966 0.92247 0.85820 0.78240 0.77929 0.79661 1.15542 1.20080 1.24176 1.18757 0.94292 0.94329 1.43945 0.93667 1.17471 0.93541 0.97644 0.92026 1.18332 0.90438 0.97742 0.91543 1.42614 1.08285 1.51862 1.39653 1.20592 0.91669 1.06595 1.02834 1.20851 0.99010 1.00485 0.96946 1.20558 0.94729 1.02781 0.98669 1.19783 0.93150 1.03470 0.96902 1.20034 1.01042 0.96511 0.90423 1.22401 1.03867 1.00126 0.95462 1.26733 0.80713 0.88121 0.82341 1.90381 1.27779 1.67708 1.53916 0.91068 0.77456 0.77561 0.86197 0.85063 0.84878 0.87972 0.93867 0.93848 0.86675 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.50 13.93 21.83 0.30 -50.20 16 2 C 0.04 2.33 4.08 85.24 0.35 2.68 16 3 Si 0.96 44.86 24.35 68.60 1.67 46.53 16 4 H -0.23 -9.58 6.05 99.48 0.60 -8.98 16 5 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.31 -14.90 7.11 99.48 0.71 -14.20 16 7 C -0.48 -26.31 8.03 23.37 0.19 -26.12 16 8 H 0.05 2.76 7.16 -2.91 -0.02 2.74 16 9 C 0.00 -0.09 4.64 -21.17 -0.10 -0.18 16 10 C 0.12 5.37 5.29 38.99 0.21 5.58 16 11 N -0.88 -35.98 5.82 -50.39 -0.29 -36.27 16 12 C -0.19 -7.30 9.89 22.37 0.22 -7.08 16 13 C -0.15 -5.25 10.03 22.41 0.22 -5.02 16 14 C -0.15 -5.11 9.59 22.01 0.21 -4.90 16 15 C -0.13 -5.35 5.15 -19.68 -0.10 -5.46 16 16 C -0.04 -1.49 4.85 29.85 0.14 -1.34 16 17 C -0.18 -6.08 5.77 29.85 0.17 -5.90 16 18 C 0.36 10.53 11.19 71.24 0.80 11.33 16 19 O -0.52 -20.97 17.90 -1.44 -0.03 -21.00 16 20 H 0.28 14.82 8.30 -92.71 -0.77 14.05 16 21 H 0.39 17.74 5.67 -92.70 -0.53 17.21 16 22 H 0.40 13.32 8.83 -92.71 -0.82 12.50 16 23 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 24 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 25 H 0.13 3.55 8.05 -2.91 -0.02 3.53 16 26 H 0.10 2.56 8.04 -2.38 -0.02 2.54 16 27 H 0.04 1.75 6.77 -2.39 -0.02 1.73 16 28 H 0.04 1.91 7.94 -2.39 -0.02 1.89 16 29 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -67.79 253.85 3.68 -64.11 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.29 Total: 33.24 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 2.31 Total: -36.41 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: 0.01 Total: -86.47 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.03 Total: -21.00 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.67 Total: 46.53 kcal Total: -67.79 3.68 -64.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396129619.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.194 kcal (2) G-P(sol) polarization free energy of solvation -67.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds