Wall clock time and date at job start Mon Mar 30 2020 03:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38213 * 120.07422 * 2 1 4 4 C 1.38306 * 120.09101 * 179.97438 * 3 2 1 5 5 C 1.38267 * 120.33802 * 0.08901 * 4 3 2 6 6 C 1.38632 * 120.06583 * 0.26587 * 5 4 3 7 7 C 1.38783 * 120.06788 * 180.02562 * 2 1 3 8 8 N 1.39813 * 120.10015 * 359.77812 * 7 2 1 9 9 C 1.36814 * 121.12243 * 346.23370 * 8 7 2 10 10 H 1.07999 * 119.99993 * 307.77428 * 9 8 7 11 11 C 1.38766 * 120.00006 * 127.77058 * 9 8 7 12 12 N 1.31611 * 120.00164 * 172.57281 * 11 9 8 13 13 Si 1.86808 * 119.99965 * 352.57522 * 11 9 8 14 14 H 1.48489 * 109.47319 * 86.69601 * 13 11 9 15 15 H 1.48503 * 109.46837 * 206.69450 * 13 11 9 16 16 H 1.48502 * 109.46845 * 326.69025 * 13 11 9 17 17 C 1.47276 * 117.75076 * 166.20788 * 8 7 2 18 18 C 1.53526 * 107.61928 * 42.07574 * 17 8 7 19 19 O 1.35872 * 119.68352 * 179.97438 * 6 5 4 20 20 H 1.08996 * 109.47193 * 116.10583 * 1 2 3 21 21 H 1.08996 * 109.46830 * 236.10869 * 1 2 3 22 22 H 1.09000 * 109.46712 * 356.10523 * 1 2 3 23 23 H 1.08001 * 119.95120 * 359.96861 * 3 2 1 24 24 H 1.07999 * 119.82792 * 180.02562 * 4 3 2 25 25 H 1.08008 * 119.96780 * 179.97438 * 5 4 3 26 26 H 0.97001 * 119.99953 * 180.02562 * 12 11 9 27 27 H 1.09005 * 109.82817 * 161.60009 * 17 8 7 28 28 H 1.09002 * 109.83081 * 282.47706 * 17 8 7 29 29 H 1.09005 * 109.58736 * 61.64244 * 18 17 8 30 30 H 1.08995 * 109.58956 * 181.92818 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1961 0.0000 4 6 3.5827 1.1965 0.0005 5 6 4.2815 0.0034 -0.0008 6 6 3.5972 -1.2023 -0.0082 7 6 2.2024 -1.2011 -0.0005 8 7 1.5069 -2.4139 0.0036 9 6 0.1692 -2.4611 0.2869 10 1 -0.2090 -1.9975 1.1860 11 6 -0.7016 -3.1045 -0.5811 12 7 -1.9610 -3.2782 -0.2409 13 14 -0.0861 -3.7242 -2.2324 14 1 0.4774 -5.0884 -2.0704 15 1 -1.2143 -3.7660 -3.1972 16 1 0.9677 -2.8106 -2.7424 17 6 2.2628 -3.6390 -0.3078 18 6 3.6110 -3.5511 0.4212 19 8 4.2916 -2.3701 -0.0100 20 1 -0.3633 -0.4522 -0.9228 21 1 -0.3633 -0.5730 0.8530 22 1 -0.3633 1.0253 0.0698 23 1 1.6601 2.1316 -0.0005 24 1 4.1196 2.1335 0.0010 25 1 5.3615 0.0106 -0.0008 26 1 -2.5696 -3.7282 -0.8475 27 1 1.7108 -4.5124 0.0397 28 1 2.4266 -3.7091 -1.3832 29 1 3.4423 -3.5027 1.4970 30 1 4.2123 -4.4289 0.1847 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527427877.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:07 Heat of formation + Delta-G solvation = 12.596004 kcal Electronic energy + Delta-G solvation = -15232.263108 eV Core-core repulsion = 12800.486019 eV Total energy + Delta-G solvation = -2431.777089 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98651 -36.87895 -35.72965 -32.18799 -31.16696 -30.15429 -27.62371 -26.16398 -23.71801 -23.23674 -20.50792 -19.82112 -17.70429 -16.84660 -15.91862 -15.72151 -14.80197 -14.43252 -13.88353 -13.54565 -13.08034 -12.83784 -12.80430 -12.24777 -12.08191 -11.48493 -11.28447 -11.14151 -10.99893 -10.73984 -10.40676 -10.11480 -10.03156 -9.61951 -8.90750 -8.73036 -7.45195 -6.49774 -6.21972 -4.07583 2.24857 2.39537 3.06351 3.20744 3.28003 3.95363 4.13755 4.45728 4.63054 4.92264 5.37453 5.57455 5.62774 5.69228 5.77077 6.00898 6.14877 6.18139 6.28879 6.40380 6.57898 6.78583 6.98343 7.08669 7.18300 7.34885 7.49413 7.65795 7.73498 8.04606 8.27334 8.54618 9.14207 9.51257 10.65542 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.029981 B = 0.014298 C = 0.011002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.709556 B = 1957.816178 C = 2544.445546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.119 4.119 3 C -0.111 4.111 4 C -0.177 4.177 5 C -0.113 4.113 6 C 0.019 3.981 7 C 0.158 3.842 8 N -0.491 5.491 9 C -0.304 4.304 10 H 0.103 0.897 11 C 0.062 3.938 12 N -0.874 5.874 13 Si 0.879 3.121 14 H -0.275 1.275 15 H -0.288 1.288 16 H -0.263 1.263 17 C 0.067 3.933 18 C 0.049 3.951 19 O -0.323 6.323 20 H 0.062 0.938 21 H 0.092 0.908 22 H 0.026 0.974 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.274 0.726 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.463 2.053 -0.241 7.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C -0.130 4.130 4 C -0.198 4.198 5 C -0.133 4.133 6 C -0.030 4.030 7 C 0.051 3.949 8 N -0.191 5.191 9 C -0.431 4.431 10 H 0.120 0.880 11 C -0.145 4.145 12 N -0.510 5.510 13 Si 0.706 3.294 14 H -0.201 1.201 15 H -0.214 1.214 16 H -0.188 1.188 17 C -0.057 4.057 18 C -0.028 4.028 19 O -0.238 6.238 20 H 0.081 0.919 21 H 0.111 0.889 22 H 0.045 0.955 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.285 1.713 -0.338 7.491 hybrid contribution -0.027 -0.588 -0.905 1.080 sum 7.258 1.125 -1.244 7.449 Atomic orbital electron populations 1.21003 0.90292 0.98603 1.04587 1.19338 0.96632 0.90542 1.05942 1.20662 0.93759 0.96418 1.02155 1.20361 0.93931 0.96168 1.09312 1.20072 0.98685 0.89790 1.04737 1.18402 0.88773 0.85756 1.10041 1.18252 0.89471 0.88284 0.98891 1.42460 1.07239 0.99917 1.69446 1.18897 0.79262 1.38034 1.06924 0.87968 1.25641 0.94777 0.96519 0.97517 1.69730 1.03843 1.40463 1.36934 0.86804 0.78729 0.79524 0.84351 1.20104 1.21418 1.18789 1.22613 0.92950 0.91394 0.98764 1.23114 0.94262 0.86702 0.98702 1.85873 1.39945 1.14612 1.83370 0.91924 0.88927 0.95518 0.87249 0.87220 0.86878 0.91589 0.89019 0.93044 0.92060 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 8.21 36.01 0.30 -1.65 16 2 C -0.12 -2.63 5.88 -104.43 -0.61 -3.25 16 3 C -0.11 -2.12 9.67 -39.57 -0.38 -2.50 16 4 C -0.18 -3.17 10.03 -39.55 -0.40 -3.56 16 5 C -0.11 -2.17 9.97 -39.43 -0.39 -2.56 16 6 C 0.02 0.41 6.52 -38.97 -0.25 0.15 16 7 C 0.16 3.67 6.34 -83.55 -0.53 3.15 16 8 N -0.49 -11.76 2.38 -112.08 -0.27 -12.02 16 9 C -0.30 -7.84 6.38 -15.13 -0.10 -7.94 16 10 H 0.10 2.83 5.99 -52.49 -0.31 2.51 16 11 C 0.06 1.61 5.10 -17.45 -0.09 1.53 16 12 N -0.87 -24.02 13.97 55.49 0.78 -23.24 16 13 Si 0.88 20.80 24.98 -169.99 -4.25 16.55 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.26 -6.48 6.95 56.52 0.39 -6.08 16 17 C 0.07 1.40 4.61 -3.35 -0.02 1.38 16 18 C 0.05 0.88 7.19 37.43 0.27 1.15 16 19 O -0.32 -6.58 10.32 -19.34 -0.20 -6.78 16 20 H 0.06 1.50 7.22 -51.93 -0.38 1.12 16 21 H 0.09 2.19 4.98 -51.93 -0.26 1.93 16 22 H 0.03 0.50 7.88 -51.93 -0.41 0.09 16 23 H 0.11 1.81 7.95 -52.49 -0.42 1.39 16 24 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 25 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 26 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.09 1.85 7.66 -51.93 -0.40 1.45 16 28 H 0.05 1.10 6.27 -51.93 -0.33 0.77 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 241.37 15.07 3.64 3.64 Total: -1.00 -28.06 241.37 -5.84 -33.89 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.33 Total: 2.07 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.21 Total: -14.11 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.51 Total: -35.27 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.20 Total: -6.78 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.25 Total: 16.55 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.06 -5.84 -33.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527427877.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.489 kcal (2) G-P(sol) polarization free energy of solvation -28.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds